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Terbium in PDB 6f2k: Crystal Structure of Hen Egg-White Lysozyme Co-Crystallized in Presence of 100 Mm Tb-XO4 and 100 Mm Potassium Phosphate Monobasic.

Enzymatic activity of Crystal Structure of Hen Egg-White Lysozyme Co-Crystallized in Presence of 100 Mm Tb-XO4 and 100 Mm Potassium Phosphate Monobasic.

All present enzymatic activity of Crystal Structure of Hen Egg-White Lysozyme Co-Crystallized in Presence of 100 Mm Tb-XO4 and 100 Mm Potassium Phosphate Monobasic.:
3.2.1.17;

Protein crystallography data

The structure of Crystal Structure of Hen Egg-White Lysozyme Co-Crystallized in Presence of 100 Mm Tb-XO4 and 100 Mm Potassium Phosphate Monobasic., PDB code: 6f2k was solved by S.Engilberge, F.Riobe, S.Di Pietro, E.Girard, E.Dumont, O.Maury, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.04 / 1.50
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 78.359, 78.359, 37.404, 90.00, 90.00, 90.00
R / Rfree (%) 19.8 / 24

Other elements in 6f2k:

The structure of Crystal Structure of Hen Egg-White Lysozyme Co-Crystallized in Presence of 100 Mm Tb-XO4 and 100 Mm Potassium Phosphate Monobasic. also contains other interesting chemical elements:

Chlorine (Cl) 3 atoms

Terbium Binding Sites:

The binding sites of Terbium atom in the Crystal Structure of Hen Egg-White Lysozyme Co-Crystallized in Presence of 100 Mm Tb-XO4 and 100 Mm Potassium Phosphate Monobasic. (pdb code 6f2k). This binding sites where shown within 5.0 Angstroms radius around Terbium atom.
In total only one binding site of Terbium was determined in the Crystal Structure of Hen Egg-White Lysozyme Co-Crystallized in Presence of 100 Mm Tb-XO4 and 100 Mm Potassium Phosphate Monobasic., PDB code: 6f2k:

Terbium binding site 1 out of 1 in 6f2k

Go back to Terbium Binding Sites List in 6f2k
Terbium binding site 1 out of 1 in the Crystal Structure of Hen Egg-White Lysozyme Co-Crystallized in Presence of 100 Mm Tb-XO4 and 100 Mm Potassium Phosphate Monobasic.


Mono view


Stereo pair view

A full contact list of Terbium with other atoms in the Tb binding site number 1 of Crystal Structure of Hen Egg-White Lysozyme Co-Crystallized in Presence of 100 Mm Tb-XO4 and 100 Mm Potassium Phosphate Monobasic. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Tb201

b:46.8
occ:0.20
O A:HOH342 2.8 66.7 1.0
OD2 A:ASP101 2.8 50.5 1.0
O A:HOH483 3.3 51.8 1.0
HB3 A:ASP101 3.5 35.5 1.0
O A:HOH458 3.7 33.4 1.0
CG A:ASP101 3.9 47.3 1.0
CB A:ASP101 4.2 34.1 1.0
O A:HOH337 4.7 42.0 1.0
HB2 A:ASP101 4.7 33.8 1.0
H A:GLY102 4.9 30.8 1.0
HH2 A:TRP63 5.0 20.5 1.0

Reference:

S.Engilberge, F.Riobe, T.Wagner, S.Di Pietro, C.Breyton, B.Franzetti, S.Shima, E.Girard, E.Dumont, O.Maury. Unveiling the Binding Modes of the Crystallophore, A Terbium-Based Nucleating and Phasing Molecular Agent For Protein Crystallography. Chemistry V. 24 9739 2018.
ISSN: ISSN 0947-6539
PubMed: 29806881
DOI: 10.1002/CHEM.201802172
Page generated: Wed Dec 16 02:27:07 2020

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