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Terbium in PDB 6hk1: Crystal Structure of the Thiazole Synthase From Methanothermococcus Thermolithotrophicus Co-Crystallized with Tb-XO4

Protein crystallography data

The structure of Crystal Structure of the Thiazole Synthase From Methanothermococcus Thermolithotrophicus Co-Crystallized with Tb-XO4, PDB code: 6hk1 was solved by S.Engilberge, T.Wagner, G.Santoni, C.Breyton, S.Shima, B.Franzetti, F.Riobe, O.Maury, E.Girard, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.09 / 2.55
Space group I 4 2 2
Cell size a, b, c (Å), α, β, γ (°) 216.863, 216.863, 207.250, 90.00, 90.00, 90.00
R / Rfree (%) 18.9 / 21.3

Other elements in 6hk1:

The structure of Crystal Structure of the Thiazole Synthase From Methanothermococcus Thermolithotrophicus Co-Crystallized with Tb-XO4 also contains other interesting chemical elements:

Sodium (Na) 1 atom

Terbium Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 49;

Binding sites:

The binding sites of Terbium atom in the Crystal Structure of the Thiazole Synthase From Methanothermococcus Thermolithotrophicus Co-Crystallized with Tb-XO4 (pdb code 6hk1). This binding sites where shown within 5.0 Angstroms radius around Terbium atom.
In total 49 binding sites of Terbium where determined in the Crystal Structure of the Thiazole Synthase From Methanothermococcus Thermolithotrophicus Co-Crystallized with Tb-XO4, PDB code: 6hk1:
Jump to Terbium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Terbium binding site 1 out of 49 in 6hk1

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Terbium binding site 1 out of 49 in the Crystal Structure of the Thiazole Synthase From Methanothermococcus Thermolithotrophicus Co-Crystallized with Tb-XO4


Mono view


Stereo pair view

A full contact list of Terbium with other atoms in the Tb binding site number 1 of Crystal Structure of the Thiazole Synthase From Methanothermococcus Thermolithotrophicus Co-Crystallized with Tb-XO4 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Tb301

b:85.6
occ:0.58
OE2 A:GLU29 2.0 1.0 1.0
OE1 A:GLU29 2.6 0.9 1.0
CD A:GLU29 2.6 0.7 1.0
O A:HOH402 3.0 76.6 1.0
O A:HOH473 3.1 63.5 1.0
CG A:GLU29 4.1 62.3 1.0

Terbium binding site 2 out of 49 in 6hk1

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Terbium binding site 2 out of 49 in the Crystal Structure of the Thiazole Synthase From Methanothermococcus Thermolithotrophicus Co-Crystallized with Tb-XO4


Mono view


Stereo pair view

A full contact list of Terbium with other atoms in the Tb binding site number 2 of Crystal Structure of the Thiazole Synthase From Methanothermococcus Thermolithotrophicus Co-Crystallized with Tb-XO4 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Tb302

b:61.8
occ:0.20
OE2 A:GLU82 2.1 0.3 1.0
OE1 A:GLU82 2.1 0.9 1.0
CD A:GLU82 2.4 0.5 1.0
O A:HOH419 3.1 69.3 1.0
O A:HOH479 3.8 61.2 1.0
CG A:GLU82 3.8 80.3 1.0
O A:HOH458 4.7 61.9 1.0
CB A:GLU82 4.8 55.3 1.0

Terbium binding site 3 out of 49 in 6hk1

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Terbium binding site 3 out of 49 in the Crystal Structure of the Thiazole Synthase From Methanothermococcus Thermolithotrophicus Co-Crystallized with Tb-XO4


Mono view


Stereo pair view

A full contact list of Terbium with other atoms in the Tb binding site number 3 of Crystal Structure of the Thiazole Synthase From Methanothermococcus Thermolithotrophicus Co-Crystallized with Tb-XO4 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Tb303

b:73.6
occ:0.20
O A:HOH489 4.1 85.0 1.0

Terbium binding site 4 out of 49 in 6hk1

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Terbium binding site 4 out of 49 in the Crystal Structure of the Thiazole Synthase From Methanothermococcus Thermolithotrophicus Co-Crystallized with Tb-XO4


Mono view


Stereo pair view

A full contact list of Terbium with other atoms in the Tb binding site number 4 of Crystal Structure of the Thiazole Synthase From Methanothermococcus Thermolithotrophicus Co-Crystallized with Tb-XO4 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Tb304

b:43.1
occ:0.10
OD2 A:ASP177 2.0 79.6 1.0
OD1 A:ASP177 2.5 73.3 1.0
CG A:ASP177 2.6 70.7 1.0
CB A:ASP177 4.0 50.8 1.0
NE2 A:HIS176 4.1 60.8 1.0
CE1 A:HIS176 4.6 60.5 1.0
CD2 A:HIS176 4.9 59.9 1.0

Terbium binding site 5 out of 49 in 6hk1

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Terbium binding site 5 out of 49 in the Crystal Structure of the Thiazole Synthase From Methanothermococcus Thermolithotrophicus Co-Crystallized with Tb-XO4


Mono view


Stereo pair view

A full contact list of Terbium with other atoms in the Tb binding site number 5 of Crystal Structure of the Thiazole Synthase From Methanothermococcus Thermolithotrophicus Co-Crystallized with Tb-XO4 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Tb305

b:76.2
occ:0.20
CE A:LYS6 4.4 0.4 1.0

Terbium binding site 6 out of 49 in 6hk1

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Terbium binding site 6 out of 49 in the Crystal Structure of the Thiazole Synthase From Methanothermococcus Thermolithotrophicus Co-Crystallized with Tb-XO4


Mono view


Stereo pair view

A full contact list of Terbium with other atoms in the Tb binding site number 6 of Crystal Structure of the Thiazole Synthase From Methanothermococcus Thermolithotrophicus Co-Crystallized with Tb-XO4 within 5.0Å range:

Terbium binding site 7 out of 49 in 6hk1

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Terbium binding site 7 out of 49 in the Crystal Structure of the Thiazole Synthase From Methanothermococcus Thermolithotrophicus Co-Crystallized with Tb-XO4


Mono view


Stereo pair view

A full contact list of Terbium with other atoms in the Tb binding site number 7 of Crystal Structure of the Thiazole Synthase From Methanothermococcus Thermolithotrophicus Co-Crystallized with Tb-XO4 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Tb307

b:51.1
occ:0.10
O A:HOH475 2.8 71.9 1.0
O A:HOH478 4.0 70.0 1.0
CE A:LYS205 4.4 92.8 1.0
O A:HOH447 4.8 46.6 1.0

Terbium binding site 8 out of 49 in 6hk1

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Terbium binding site 8 out of 49 in the Crystal Structure of the Thiazole Synthase From Methanothermococcus Thermolithotrophicus Co-Crystallized with Tb-XO4


Mono view


Stereo pair view

A full contact list of Terbium with other atoms in the Tb binding site number 8 of Crystal Structure of the Thiazole Synthase From Methanothermococcus Thermolithotrophicus Co-Crystallized with Tb-XO4 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Tb308

b:49.8
occ:0.10
OE1 A:GLU257 2.5 0.8 1.0
O A:HOH444 2.6 88.3 1.0
O A:HOH482 3.0 74.1 1.0
CD A:GLU257 3.2 0.5 1.0
OE2 A:GLU257 3.2 0.6 1.0
O A:HOH417 3.7 77.4 1.0
CG A:GLU257 4.7 78.7 1.0
O A:HOH451 4.7 85.3 1.0

Terbium binding site 9 out of 49 in 6hk1

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Terbium binding site 9 out of 49 in the Crystal Structure of the Thiazole Synthase From Methanothermococcus Thermolithotrophicus Co-Crystallized with Tb-XO4


Mono view


Stereo pair view

A full contact list of Terbium with other atoms in the Tb binding site number 9 of Crystal Structure of the Thiazole Synthase From Methanothermococcus Thermolithotrophicus Co-Crystallized with Tb-XO4 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Tb309

b:50.7
occ:0.10
O A:HOH438 4.8 56.2 1.0

Terbium binding site 10 out of 49 in 6hk1

Go back to Terbium Binding Sites List in 6hk1
Terbium binding site 10 out of 49 in the Crystal Structure of the Thiazole Synthase From Methanothermococcus Thermolithotrophicus Co-Crystallized with Tb-XO4


Mono view


Stereo pair view

A full contact list of Terbium with other atoms in the Tb binding site number 10 of Crystal Structure of the Thiazole Synthase From Methanothermococcus Thermolithotrophicus Co-Crystallized with Tb-XO4 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Tb310

b:52.1
occ:0.10
O A:HOH456 3.8 65.1 1.0

Reference:

S.Engilberge, T.Wagner, G.Santoni, C.Breyton, S.Shima, B.Franzetti, F.Riobe, O.Maury, E.Girard. Protein Crystal Structure Determination with the Crystallophore, A Nucleating and Phasing Agent. J.Appl.Crystallogr. V. 52 722 2019.
ISSN: ISSN 0021-8898
PubMed: 31396026
DOI: 10.1107/S1600576719006381
Page generated: Wed Dec 16 02:27:20 2020

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