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Terbium in PDB 6tmr: Mokola Virus Glycoprotein, Monomeric Post-Fusion Conformation

Protein crystallography data

The structure of Mokola Virus Glycoprotein, Monomeric Post-Fusion Conformation, PDB code: 6tmr was solved by L.Belot, S.Roche, P.Legrand, Y.Gaudin, A.Albertini, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.23 / 2.89
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 76.279, 81.951, 231.337, 90.00, 90.00, 90.00
R / Rfree (%) 22.6 / 27.8

Terbium Binding Sites:

The binding sites of Terbium atom in the Mokola Virus Glycoprotein, Monomeric Post-Fusion Conformation (pdb code 6tmr). This binding sites where shown within 5.0 Angstroms radius around Terbium atom.
In total 6 binding sites of Terbium where determined in the Mokola Virus Glycoprotein, Monomeric Post-Fusion Conformation, PDB code: 6tmr:
Jump to Terbium binding site number: 1; 2; 3; 4; 5; 6;

Terbium binding site 1 out of 6 in 6tmr

Go back to Terbium Binding Sites List in 6tmr
Terbium binding site 1 out of 6 in the Mokola Virus Glycoprotein, Monomeric Post-Fusion Conformation


Mono view


Stereo pair view

A full contact list of Terbium with other atoms in the Tb binding site number 1 of Mokola Virus Glycoprotein, Monomeric Post-Fusion Conformation within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Tb502

b:0.8
occ:0.57
C A:SER341 3.6 71.2 1.0
O A:SER341 3.7 90.5 1.0
N A:LYS342 3.7 72.8 1.0
CA A:LYS342 4.0 72.4 1.0
O A:LEU339 4.1 65.5 1.0
NE2 A:GLN370 4.1 0.0 1.0
O A:PRO340 4.3 89.2 1.0
CA A:SER341 4.4 72.2 1.0
CB A:LYS342 4.5 74.4 1.0
C A:PRO340 4.6 69.5 1.0
N A:SER341 4.7 70.2 1.0

Terbium binding site 2 out of 6 in 6tmr

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Terbium binding site 2 out of 6 in the Mokola Virus Glycoprotein, Monomeric Post-Fusion Conformation


Mono view


Stereo pair view

A full contact list of Terbium with other atoms in the Tb binding site number 2 of Mokola Virus Glycoprotein, Monomeric Post-Fusion Conformation within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Tb503

b:0.1
occ:0.58
OE1 A:GLU267 2.4 95.5 1.0
TB A:TB506 2.8 0.5 0.3
CD A:GLU267 3.5 89.8 1.0
OE2 A:GLU267 4.1 96.2 1.0
CG A:GLU267 4.6 69.1 1.0

Terbium binding site 3 out of 6 in 6tmr

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Terbium binding site 3 out of 6 in the Mokola Virus Glycoprotein, Monomeric Post-Fusion Conformation


Mono view


Stereo pair view

A full contact list of Terbium with other atoms in the Tb binding site number 3 of Mokola Virus Glycoprotein, Monomeric Post-Fusion Conformation within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Tb504

b:0.2
occ:0.57
CB A:LEU284 4.7 54.5 1.0

Terbium binding site 4 out of 6 in 6tmr

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Terbium binding site 4 out of 6 in the Mokola Virus Glycoprotein, Monomeric Post-Fusion Conformation


Mono view


Stereo pair view

A full contact list of Terbium with other atoms in the Tb binding site number 4 of Mokola Virus Glycoprotein, Monomeric Post-Fusion Conformation within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Tb505

b:0.5
occ:0.64
OE1 A:GLU9 2.1 0.2 1.0
OE2 A:GLU9 2.3 0.5 1.0
CD A:GLU9 2.5 0.3 1.0
CG A:GLU9 4.0 0.0 1.0
CB A:GLU9 4.8 95.2 1.0
CD2 A:TYR328 4.9 75.9 1.0
CB A:TYR328 5.0 86.2 1.0

Terbium binding site 5 out of 6 in 6tmr

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Terbium binding site 5 out of 6 in the Mokola Virus Glycoprotein, Monomeric Post-Fusion Conformation


Mono view


Stereo pair view

A full contact list of Terbium with other atoms in the Tb binding site number 5 of Mokola Virus Glycoprotein, Monomeric Post-Fusion Conformation within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Tb506

b:0.5
occ:0.34
OE1 A:GLU267 2.7 95.5 1.0
TB A:TB503 2.8 0.1 0.6
OE2 A:GLU267 3.1 96.2 1.0
CD A:GLU267 3.3 89.8 1.0
NE A:ARG264 3.5 98.0 1.0
CD A:ARG264 3.9 75.8 1.0
CZ A:ARG264 4.3 0.3 1.0
NH2 A:ARG264 4.6 99.8 1.0
CG A:GLU267 4.8 69.1 1.0
CG A:ARG264 4.9 57.1 1.0

Terbium binding site 6 out of 6 in 6tmr

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Terbium binding site 6 out of 6 in the Mokola Virus Glycoprotein, Monomeric Post-Fusion Conformation


Mono view


Stereo pair view

A full contact list of Terbium with other atoms in the Tb binding site number 6 of Mokola Virus Glycoprotein, Monomeric Post-Fusion Conformation within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Tb507

b:0.2
occ:0.34
OE2 A:GLU69 2.4 99.5 1.0
OE1 A:GLU69 2.4 96.7 1.0
CD A:GLU69 2.6 92.3 1.0
CG A:GLU69 4.0 76.8 1.0

Reference:

L.Belot, M.Ouldali, S.Roche, P.Legrand, Y.Gaudin, A.Albertini. Crystal Structure of Mokola Virus Glycoprotein To Be Published.
Page generated: Wed Dec 16 02:27:23 2020

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