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Terbium in PDB 6tvy: Structure of Hen Egg White Lysozyme Crystallized in the Presence of Tb-XO4 Crystallophore in the Xtalcontroller Device

Enzymatic activity of Structure of Hen Egg White Lysozyme Crystallized in the Presence of Tb-XO4 Crystallophore in the Xtalcontroller Device

All present enzymatic activity of Structure of Hen Egg White Lysozyme Crystallized in the Presence of Tb-XO4 Crystallophore in the Xtalcontroller Device:
3.2.1.17;

Protein crystallography data

The structure of Structure of Hen Egg White Lysozyme Crystallized in the Presence of Tb-XO4 Crystallophore in the Xtalcontroller Device, PDB code: 6tvy was solved by R.De Wijn, K.Rollet, L.Coudray, A.G.Mcewen, B.Lorber, C.Sauter, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.24 / 1.51
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 78.810, 78.810, 38.332, 90.00, 90.00, 90.00
R / Rfree (%) 14.2 / 17.5

Other elements in 6tvy:

The structure of Structure of Hen Egg White Lysozyme Crystallized in the Presence of Tb-XO4 Crystallophore in the Xtalcontroller Device also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms
Sodium (Na) 1 atom

Terbium Binding Sites:

The binding sites of Terbium atom in the Structure of Hen Egg White Lysozyme Crystallized in the Presence of Tb-XO4 Crystallophore in the Xtalcontroller Device (pdb code 6tvy). This binding sites where shown within 5.0 Angstroms radius around Terbium atom.
In total 3 binding sites of Terbium where determined in the Structure of Hen Egg White Lysozyme Crystallized in the Presence of Tb-XO4 Crystallophore in the Xtalcontroller Device, PDB code: 6tvy:
Jump to Terbium binding site number: 1; 2; 3;

Terbium binding site 1 out of 3 in 6tvy

Go back to Terbium Binding Sites List in 6tvy
Terbium binding site 1 out of 3 in the Structure of Hen Egg White Lysozyme Crystallized in the Presence of Tb-XO4 Crystallophore in the Xtalcontroller Device


Mono view


Stereo pair view

A full contact list of Terbium with other atoms in the Tb binding site number 1 of Structure of Hen Egg White Lysozyme Crystallized in the Presence of Tb-XO4 Crystallophore in the Xtalcontroller Device within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Tb304

b:49.9
occ:0.81
 TB A:7MT304 0.0 49.9 0.8
H061 A:7MT304 1.7 53.2 0.8
N23 A:7MT304 2.1 50.4 0.8
O26 A:7MT304 2.3 47.6 0.8
OD2 A:ASP101 2.3 41.0 1.0
N02 A:7MT304 2.5 49.5 0.8
N06 A:7MT304 2.6 44.4 0.8
N09 A:7MT304 2.7 49.0 0.8
N17 A:7MT304 2.7 53.2 0.8
OD1 A:ASP101 2.7 42.1 1.0
CG A:ASP101 2.9 39.8 1.0
C22 A:7MT304 2.9 49.9 0.8
C24 A:7MT304 3.0 48.6 0.8
C11 A:7MT304 3.1 50.3 0.8
H301 A:7MT304 3.2 61.9 0.8
C30 A:7MT304 3.2 51.6 0.8
H012 A:7MT304 3.2 59.4 0.8
C01 A:7MT304 3.2 49.5 0.8
O27 A:7MT304 3.3 58.2 0.8
C05 A:7MT304 3.3 47.3 0.8
H051 A:7MT304 3.3 56.7 0.8
C29 A:7MT304 3.3 50.1 0.8
C10 A:7MT304 3.4 53.2 0.8
C04 A:7MT304 3.4 48.6 0.8
C03 A:7MT304 3.5 49.8 0.8
C08 A:7MT304 3.5 47.8 0.8
H291 A:7MT304 3.5 60.2 0.8
C07 A:7MT304 3.6 44.9 0.8
H081 A:7MT304 3.6 57.4 0.8
C16 A:7MT304 3.8 56.5 0.8
C18 A:7MT304 3.9 58.6 0.8
H042 A:7MT304 4.0 58.4 0.8
H031 A:7MT304 4.0 59.8 0.8
H302 A:7MT304 4.1 61.9 0.8
H072 A:7MT304 4.1 53.9 0.8
H041 A:7MT304 4.1 58.4 0.8
H011 A:7MT304 4.1 59.4 0.8
H032 A:7MT304 4.2 59.8 0.8
H052 A:7MT304 4.2 56.7 0.8
O25 A:7MT304 4.2 47.9 0.8
H292 A:7MT304 4.2 60.2 0.8
H071 A:7MT304 4.2 53.9 0.8
C21 A:7MT304 4.3 51.4 0.8
H082 A:7MT304 4.4 57.4 0.8
C19 A:7MT304 4.4 50.8 0.8
CB A:ASP101 4.4 35.7 1.0
C13 A:7MT304 4.8 55.6 0.8
C20 A:7MT304 4.9 51.6 0.8
H211 A:7MT304 5.0 61.6 0.8

Terbium binding site 2 out of 3 in 6tvy

Go back to Terbium Binding Sites List in 6tvy
Terbium binding site 2 out of 3 in the Structure of Hen Egg White Lysozyme Crystallized in the Presence of Tb-XO4 Crystallophore in the Xtalcontroller Device


Mono view


Stereo pair view

A full contact list of Terbium with other atoms in the Tb binding site number 2 of Structure of Hen Egg White Lysozyme Crystallized in the Presence of Tb-XO4 Crystallophore in the Xtalcontroller Device within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Tb305

b:56.9
occ:0.40
 O25 A:7MT304 2.2 47.9 0.8
TB A:TB306 2.5 48.3 0.2
C24 A:7MT304 3.4 48.6 0.8
H211 A:7MT304 4.1 61.6 0.8
O26 A:7MT304 4.1 47.6 0.8
H301 A:7MT304 4.4 61.9 0.8
C22 A:7MT304 4.4 49.9 0.8
C21 A:7MT304 4.6 51.4 0.8

Terbium binding site 3 out of 3 in 6tvy

Go back to Terbium Binding Sites List in 6tvy
Terbium binding site 3 out of 3 in the Structure of Hen Egg White Lysozyme Crystallized in the Presence of Tb-XO4 Crystallophore in the Xtalcontroller Device


Mono view


Stereo pair view

A full contact list of Terbium with other atoms in the Tb binding site number 3 of Structure of Hen Egg White Lysozyme Crystallized in the Presence of Tb-XO4 Crystallophore in the Xtalcontroller Device within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Tb306

b:48.3
occ:0.20
 O25 A:7MT304 2.1 47.9 0.8
TB A:TB305 2.5 56.9 0.4
H211 A:7MT304 2.9 61.6 0.8
C24 A:7MT304 3.1 48.6 0.8
C21 A:7MT304 3.7 51.4 0.8
C22 A:7MT304 3.9 49.9 0.8
O26 A:7MT304 4.0 47.6 0.8
C20 A:7MT304 4.9 51.6 0.8

Reference:

R.De Wijn, K.Rollet, S.Engilberge, A.G.Mcewen, O.Hennig, H.Betat, M.Moerl, F.Riobe, O.Maury, E.Girard, P.Benas, B.Lorber, C.Sauter. Monitoring the Production of High Diffraction-Quality Crystals of Two Enzymes in Real Time Using in Situ Dynamic Light Scattering Crystals 2020.
ISSN: ESSN 2073-4352
DOI: 10.3390/CRYST10020065
Page generated: Fri Oct 11 08:43:08 2024

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