Atomistry » Terbium » PDB 6xzf-8bl6 » 6y1r
Atomistry »
  Terbium »
    PDB 6xzf-8bl6 »
      6y1r »

Terbium in PDB 6y1r: NB22-Lbt

Protein crystallography data

The structure of NB22-Lbt, PDB code: 6y1r was solved by G.Pompidor, S.Zimmermann, C.Loew, T.Schneider, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 80.13 / 1.85
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 45.469, 49.425, 81.349, 91.71, 99.18, 102.61
R / Rfree (%) 20.4 / 23.5

Terbium Binding Sites:

The binding sites of Terbium atom in the NB22-Lbt (pdb code 6y1r). This binding sites where shown within 5.0 Angstroms radius around Terbium atom.
In total 9 binding sites of Terbium where determined in the NB22-Lbt, PDB code: 6y1r:
Jump to Terbium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9;

Terbium binding site 1 out of 9 in 6y1r

Go back to Terbium Binding Sites List in 6y1r
Terbium binding site 1 out of 9 in the NB22-Lbt


Mono view


Stereo pair view

A full contact list of Terbium with other atoms in the Tb binding site number 1 of NB22-Lbt within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Tb201

b:28.4
occ:0.78
OE2 A:GLU42N 2.5 23.4 1.0
OD1 A:ASP42G 2.5 29.3 1.0
O A:TRP42I 2.6 22.8 1.0
OE1 A:GLU42N 2.6 23.1 1.0
OD1 A:ASN42E 2.6 28.3 1.0
OD1 A:ASP42C 2.6 21.4 1.0
OE1 A:GLU42K 2.7 23.9 1.0
OE2 A:GLU42K 2.7 23.4 1.0
CD A:GLU42N 2.9 25.1 1.0
OD2 A:ASP42G 3.0 31.2 1.0
CD A:GLU42K 3.0 24.7 1.0
CG A:ASP42G 3.0 31.8 1.0
HD1 A:TRP42I 3.5 32.9 1.0
CG A:ASN42E 3.5 32.8 1.0
CG A:ASP42C 3.6 23.8 1.0
H A:ASP42G 3.6 37.7 1.0
HA A:ASP42C 3.6 30.2 1.0
HA A:ILE42J 3.7 30.2 1.0
HD21 A:ASN42E 3.7 40.9 1.0
H A:TRP42I 3.7 24.2 1.0
C A:TRP42I 3.7 26.6 1.0
H A:ASN42E 3.7 38.4 1.0
H A:GLU42K 3.9 30.1 1.0
ND2 A:ASN42E 4.0 34.0 1.0
OD2 A:ASP42C 4.2 21.9 1.0
CD1 A:TRP42I 4.3 27.4 1.0
CA A:ASP42C 4.3 25.1 1.0
H A:ASN42F 4.3 40.4 1.0
CG A:GLU42N 4.3 28.2 1.0
CB A:ASP42G 4.4 31.6 1.0
N A:ASP42G 4.4 31.4 1.0
CA A:ILE42J 4.4 25.1 1.0
N A:GLU42K 4.4 25.1 1.0
CB A:ASP42C 4.4 25.1 1.0
N A:TRP42I 4.4 20.2 1.0
N A:ILE42J 4.5 25.4 1.0
HD13 A:ILE42J 4.5 31.6 1.0
H A:GLY42H 4.5 33.6 1.0
CG A:GLU42K 4.5 26.5 1.0
N A:ASN42E 4.6 32.0 1.0
HB2 A:ASP42C 4.6 30.1 1.0
H A:THR42D 4.6 25.6 1.0
C A:ASP42C 4.6 20.4 1.0
HG3 A:GLU42N 4.6 33.9 1.0
HB3 A:ASP42G 4.6 37.9 1.0
N A:ASN42F 4.7 33.6 1.0
CA A:TRP42I 4.7 23.2 1.0
CB A:ASN42E 4.7 30.3 1.0
C A:ILE42J 4.8 25.6 1.0
HD22 A:ASN42E 4.8 40.9 1.0
N A:THR42D 4.8 21.3 1.0
HG2 A:GLU42N 4.8 33.9 1.0
HE1 A:TRP42I 4.8 33.5 1.0
CA A:ASP42G 4.9 31.1 1.0
O A:HOH302 4.9 29.9 1.0
HB2 A:GLU42N 4.9 37.1 1.0
C A:ASN42E 4.9 35.5 1.0
HG2 A:GLU42K 4.9 31.8 1.0
HG3 A:GLU42K 4.9 31.8 1.0
N A:GLY42H 4.9 28.0 1.0
NE1 A:TRP42I 5.0 27.9 1.0
CA A:ASN42E 5.0 32.4 1.0

Terbium binding site 2 out of 9 in 6y1r

Go back to Terbium Binding Sites List in 6y1r
Terbium binding site 2 out of 9 in the NB22-Lbt


Mono view


Stereo pair view

A full contact list of Terbium with other atoms in the Tb binding site number 2 of NB22-Lbt within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Tb202

b:28.3
occ:0.73
OE2 D:GLU61 2.5 22.1 1.0
OD1 D:ASP62 2.6 27.8 1.0
OD1 A:ASP62 2.6 24.5 1.0
O D:HOH352 2.6 29.9 1.0
O D:HOH347 2.6 33.4 1.0
OE1 A:GLU61 2.7 29.0 1.0
OE2 A:GLU61 2.7 28.7 1.0
OE1 D:GLU61 2.7 38.6 1.0
O D:HOH342 2.7 35.5 1.0
CD D:GLU61 2.9 29.7 1.0
CD A:GLU61 3.0 30.7 1.0
CG D:ASP62 3.5 29.3 1.0
CG A:ASP62 3.5 27.9 1.0
H A:ASP62 3.7 27.1 1.0
H D:ASP62 3.7 31.0 1.0
H D:SER63 3.8 30.9 1.0
OD2 D:ASP62 3.8 24.7 1.0
H A:SER63 3.8 32.9 1.0
OD2 A:ASP62 3.9 25.3 1.0
HB3 A:SER63 4.2 35.1 1.0
HB3 D:SER63 4.2 35.2 1.0
N A:ASP62 4.3 22.6 1.0
N D:ASP62 4.4 25.9 1.0
CG D:GLU61 4.4 28.6 1.0
HG A:SER63 4.5 37.3 1.0
CG A:GLU61 4.5 28.7 1.0
N A:SER63 4.5 27.4 1.0
N D:SER63 4.6 25.7 1.0
HG D:SER63 4.7 39.1 1.0
HG3 D:GLU61 4.7 34.3 1.0
CB A:ASP62 4.8 26.5 1.0
CB D:ASP62 4.8 28.2 1.0
O D:HOH332 4.8 44.4 1.0
O A:HOH339 4.8 37.4 1.0
HA D:GLU61 4.9 26.0 1.0
HG2 D:GLU61 4.9 34.3 1.0
HG3 A:GLU61 4.9 34.5 1.0
HG2 A:GLU61 4.9 34.5 1.0
CA A:ASP62 5.0 25.3 1.0
CB A:SER63 5.0 29.2 1.0

Terbium binding site 3 out of 9 in 6y1r

Go back to Terbium Binding Sites List in 6y1r
Terbium binding site 3 out of 9 in the NB22-Lbt


Mono view


Stereo pair view

A full contact list of Terbium with other atoms in the Tb binding site number 3 of NB22-Lbt within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Tb201

b:40.2
occ:0.68
OD1 B:ASP42C 2.6 31.9 1.0
OE1 B:GLU42N 2.6 32.6 1.0
O B:TRP42I 2.7 36.7 1.0
OE2 B:GLU42N 2.7 39.8 1.0
OE2 B:GLU42K 2.7 36.4 1.0
OD1 B:ASP42G 2.7 47.5 1.0
OE1 B:GLU42K 2.7 37.2 1.0
OD1 B:ASN42E 2.7 50.9 1.0
HD21 B:ASN42E 2.8 65.7 1.0
CD B:GLU42N 3.0 37.0 1.0
CD B:GLU42K 3.0 37.0 1.0
CG B:ASP42G 3.2 44.1 1.0
CG B:ASN42E 3.2 51.7 1.0
ND2 B:ASN42E 3.3 54.8 1.0
OD2 B:ASP42G 3.3 43.2 1.0
H B:ASP42G 3.3 58.5 1.0
C B:TRP42I 3.6 38.8 1.0
HA B:ASP42C 3.7 48.4 1.0
H B:TRP42I 3.7 48.7 1.0
HA B:ILE42J 3.7 39.6 1.0
CG B:ASP42C 3.8 36.0 1.0
H B:GLU42K 3.9 38.7 1.0
H B:ASN42E 4.0 62.9 1.0
HD22 B:ASN42E 4.0 65.7 1.0
H B:ASN42F 4.0 60.8 1.0
HB2 B:TRP42I 4.1 52.9 1.0
N B:ASP42G 4.2 48.7 1.0
N B:TRP42I 4.4 40.6 1.0
CB B:ASP42G 4.4 44.2 1.0
N B:ILE42J 4.4 35.8 1.0
CG B:GLU42N 4.4 37.5 1.0
H B:THR42D 4.4 53.6 1.0
N B:ASN42F 4.4 50.7 1.0
CA B:ILE42J 4.4 33.0 1.0
N B:GLU42K 4.5 32.3 1.0
CA B:ASP42C 4.5 40.4 1.0
CA B:TRP42I 4.5 41.9 1.0
HB3 B:ASP42G 4.5 53.0 1.0
N B:ASN42E 4.5 52.4 1.0
HD13 B:ILE42J 4.5 37.2 1.0
CG B:GLU42K 4.5 39.3 1.0
CB B:ASN42E 4.6 49.5 1.0
OD2 B:ASP42C 4.6 36.5 1.0
HG3 B:GLU42N 4.7 44.9 1.0
O B:HOH332 4.7 46.8 1.0
N B:THR42D 4.7 44.7 1.0
CB B:ASP42C 4.7 38.1 1.0
C B:ASP42C 4.7 43.6 1.0
H B:GLY42H 4.7 54.3 1.0
CA B:ASP42G 4.7 45.4 1.0
CB B:TRP42I 4.8 44.1 1.0
C B:ASN42E 4.8 50.8 1.0
C B:ILE42J 4.9 31.7 1.0
CA B:ASN42E 4.9 50.7 1.0
HB2 B:GLU42N 4.9 41.1 1.0
HG2 B:GLU42K 4.9 47.2 1.0
HG2 B:GLU42N 4.9 44.9 1.0
HB3 B:ASN42E 4.9 59.4 1.0
N B:GLY42H 5.0 45.2 1.0
O B:HOH329 5.0 45.5 1.0

Terbium binding site 4 out of 9 in 6y1r

Go back to Terbium Binding Sites List in 6y1r
Terbium binding site 4 out of 9 in the NB22-Lbt


Mono view


Stereo pair view

A full contact list of Terbium with other atoms in the Tb binding site number 4 of NB22-Lbt within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Tb201

b:40.2
occ:0.63
OD1 C:ASP42G 2.6 46.5 1.0
OD1 C:ASP42C 2.6 38.4 1.0
OE1 C:GLU42N 2.7 48.2 1.0
O C:TRP42I 2.7 40.4 1.0
OE2 C:GLU42N 2.7 43.7 1.0
OE1 C:GLU42K 2.7 33.7 1.0
OE2 C:GLU42K 2.7 40.4 1.0
OD1 C:ASN42E 2.7 43.1 1.0
CD C:GLU42N 3.0 47.8 1.0
CD C:GLU42K 3.1 37.3 1.0
CG C:ASP42G 3.4 48.1 1.0
C C:TRP42I 3.4 42.7 1.0
HA C:ASP42C 3.5 53.0 1.0
OD2 C:ASP42G 3.5 46.4 1.0
HA C:ILE42J 3.6 51.1 1.0
H C:TRP42I 3.6 50.2 1.0
HB2 C:TRP42I 3.6 57.2 1.0
CG C:ASP42C 3.7 42.0 1.0
H C:ASP42G 3.7 57.4 1.0
CG C:ASN42E 3.8 45.9 1.0
H C:GLU42K 3.9 55.2 1.0
H C:ASN42E 3.9 56.9 1.0
HD21 C:ASN42E 3.9 57.5 1.0
HD13 C:ILE42J 4.1 53.7 1.0
H C:THR42D 4.1 53.5 1.0
N C:TRP42I 4.2 41.8 1.0
N C:ILE42J 4.2 40.1 1.0
ND2 C:ASN42E 4.2 48.0 1.0
CA C:TRP42I 4.2 43.7 1.0
CA C:ASP42C 4.2 44.2 1.0
CA C:ILE42J 4.3 42.6 1.0
H C:ASN42F 4.4 59.5 1.0
CB C:TRP42I 4.4 47.7 1.0
N C:GLU42K 4.4 46.0 1.0
OD2 C:ASP42C 4.4 46.3 1.0
N C:THR42D 4.5 44.5 1.0
CG C:GLU42N 4.5 51.5 1.0
CB C:ASP42C 4.5 43.8 1.0
N C:ASP42G 4.5 47.8 1.0
C C:ASP42C 4.5 41.6 1.0
N C:ASN42E 4.6 47.4 1.0
CG C:GLU42K 4.6 41.2 1.0
CB C:ASP42G 4.7 48.0 1.0
O C:GLU42K 4.7 46.8 1.0
HB3 C:TRP42I 4.8 57.2 1.0
C C:ILE42J 4.8 44.8 1.0
HB2 C:ASP42C 4.8 52.5 1.0
HB2 C:GLU42N 4.8 65.7 1.0
HG3 C:GLU42N 4.8 61.8 1.0
N C:ASN42F 4.8 49.6 1.0
H C:GLY42H 4.9 55.4 1.0
H C:ILE42J 5.0 48.1 1.0
HG2 C:GLU42K 5.0 49.5 1.0
CD1 C:ILE42J 5.0 44.7 1.0

Terbium binding site 5 out of 9 in 6y1r

Go back to Terbium Binding Sites List in 6y1r
Terbium binding site 5 out of 9 in the NB22-Lbt


Mono view


Stereo pair view

A full contact list of Terbium with other atoms in the Tb binding site number 5 of NB22-Lbt within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Tb202

b:40.4
occ:0.39
H C:ASP42M 2.3 73.3 1.0
HG3 C:GLU42N 2.6 61.8 1.0
O C:GLU42K 2.7 46.8 1.0
HA3 C:GLY42L 2.7 67.0 1.0
O C:HOH306 2.7 46.9 1.0
O C:HOH357 2.7 56.9 1.0
H C:GLU42N 2.8 72.5 1.0
N C:ASP42M 2.8 61.1 1.0
O C:HOH359 3.0 29.9 1.0
HB2 C:ASP42M 3.2 76.4 1.0
OE2 C:GLU42K 3.4 40.4 1.0
CA C:GLY42L 3.4 55.8 1.0
C C:GLY42L 3.4 56.6 1.0
N C:GLU42N 3.4 60.4 1.0
CG C:GLU42N 3.5 51.5 1.0
C C:GLU42K 3.6 49.6 1.0
OE2 C:GLU42N 3.6 43.7 1.0
CD C:GLU42N 3.7 47.8 1.0
CA C:ASP42M 3.7 62.6 1.0
HG2 C:GLU42K 3.8 49.5 1.0
CB C:ASP42M 3.9 63.7 1.0
HB2 C:GLU42N 4.0 65.7 1.0
C C:ASP42M 4.0 61.4 1.0
N C:GLY42L 4.0 54.0 1.0
CB C:GLU42N 4.1 54.8 1.0
HG2 C:GLU42N 4.2 61.8 1.0
HA2 C:GLY42L 4.2 67.0 1.0
CD C:GLU42K 4.2 37.3 1.0
CA C:GLU42N 4.4 59.6 1.0
HB C:THR42D 4.4 57.7 1.0
OE1 C:GLU42N 4.5 48.2 1.0
O C:GLY42L 4.5 52.4 1.0
H C:GLU42K 4.5 55.2 1.0
CG C:GLU42K 4.5 41.2 1.0
HB3 C:ASP42M 4.6 76.4 1.0
HA C:ASP42M 4.6 75.1 1.0
OD1 C:ASP42M 4.7 64.5 1.0
H C:GLY42L 4.8 64.8 1.0
CG C:ASP42M 4.9 64.4 1.0
CA C:GLU42K 4.9 46.7 1.0
HA C:GLU42N 4.9 71.5 1.0

Terbium binding site 6 out of 9 in 6y1r

Go back to Terbium Binding Sites List in 6y1r
Terbium binding site 6 out of 9 in the NB22-Lbt


Mono view


Stereo pair view

A full contact list of Terbium with other atoms in the Tb binding site number 6 of NB22-Lbt within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Tb205

b:33.8
occ:0.82
OD1 E:ASP62 2.5 24.4 1.0
OD1 C:ASP62 2.6 23.9 1.0
OE2 C:GLU61 2.6 30.7 1.0
O E:HOH357 2.7 34.5 1.0
O E:HOH327 2.7 37.6 1.0
OE2 E:GLU61 2.7 32.2 1.0
OE1 C:GLU61 2.7 34.5 1.0
O E:HOH349 2.7 37.2 1.0
OE1 E:GLU61 2.8 39.8 1.0
CD C:GLU61 3.0 33.0 1.0
CD E:GLU61 3.1 35.9 1.0
CG E:ASP62 3.4 28.0 1.0
CG C:ASP62 3.5 28.0 1.0
OD2 E:ASP62 3.7 27.3 1.0
H C:ASP62 3.7 28.0 1.0
OD2 C:ASP62 3.7 26.4 1.0
H E:ASP62 3.8 33.2 1.0
H C:SER63 3.8 27.6 1.0
H E:SER63 3.9 34.6 1.0
HB3 E:SER63 4.1 37.2 1.0
HB3 C:SER63 4.2 32.2 1.0
N C:ASP62 4.4 23.3 1.0
N E:ASP62 4.5 27.7 1.0
HG E:SER63 4.5 37.5 1.0
CG C:GLU61 4.5 33.3 1.0
N C:SER63 4.5 23.0 1.0
N E:SER63 4.6 28.8 1.0
CG E:GLU61 4.6 34.7 1.0
OE2 E:GLU46 4.7 50.4 1.0
HG C:SER63 4.7 37.9 1.0
CB E:ASP62 4.7 27.9 1.0
CB C:ASP62 4.7 28.1 1.0
O E:HOH358 4.8 43.2 1.0
O C:HOH307 4.8 45.0 1.0
HG3 C:GLU61 4.9 40.0 1.0
CB E:SER63 4.9 31.0 1.0
HG3 E:GLU61 4.9 41.6 1.0
OE2 C:GLU46 4.9 60.4 1.0
HG2 C:GLU61 4.9 40.0 1.0
HA C:GLU61 4.9 28.9 1.0
CA C:ASP62 5.0 23.2 1.0
OG E:SER63 5.0 31.3 1.0

Terbium binding site 7 out of 9 in 6y1r

Go back to Terbium Binding Sites List in 6y1r
Terbium binding site 7 out of 9 in the NB22-Lbt


Mono view


Stereo pair view

A full contact list of Terbium with other atoms in the Tb binding site number 7 of NB22-Lbt within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Tb201

b:32.0
occ:0.82
OD1 D:ASP42C 2.5 24.2 1.0
OE2 D:GLU42N 2.6 27.2 1.0
O D:TRP42I 2.6 27.9 1.0
OD1 D:ASN42E 2.6 30.4 1.0
OE1 D:GLU42N 2.6 27.1 1.0
OD1 D:ASP42G 2.6 23.7 1.0
OE1 D:GLU42K 2.6 28.4 1.0
OE2 D:GLU42K 2.7 26.1 1.0
CD D:GLU42N 2.9 27.4 1.0
CD D:GLU42K 3.0 28.6 1.0
HD21 D:ASN42E 3.2 44.5 1.0
CG D:ASP42G 3.2 28.2 1.0
OD2 D:ASP42G 3.3 29.9 1.0
CG D:ASN42E 3.3 33.9 1.0
H D:ASP42G 3.5 39.0 1.0
C D:TRP42I 3.6 26.7 1.0
ND2 D:ASN42E 3.6 37.1 1.0
H D:ASN42E 3.7 39.9 1.0
CG D:ASP42C 3.7 26.6 1.0
HA D:ILE42J 3.7 33.6 1.0
HA D:ASP42C 3.7 24.7 1.0
HB2 D:TRP42I 3.9 29.6 1.0
H D:GLU42K 3.9 28.7 1.0
H D:TRP42I 3.9 26.2 1.0
H D:ASN42F 4.3 42.0 1.0
N D:TRP42I 4.3 21.8 1.0
N D:ASP42G 4.3 32.5 1.0
HD22 D:ASN42E 4.3 44.5 1.0
CG D:GLU42N 4.4 27.9 1.0
CA D:TRP42I 4.4 23.8 1.0
N D:ILE42J 4.4 26.4 1.0
OD2 D:ASP42C 4.4 32.2 1.0
CA D:ASP42C 4.4 20.6 1.0
N D:GLU42K 4.4 23.9 1.0
CA D:ILE42J 4.4 28.0 1.0
N D:ASN42E 4.4 33.3 1.0
HD13 D:ILE42J 4.5 27.6 1.0
CG D:GLU42K 4.5 32.0 1.0
H D:GLY42H 4.5 32.7 1.0
CB D:ASP42G 4.5 29.2 1.0
H D:THR42D 4.5 31.4 1.0
CB D:TRP42I 4.5 24.6 1.0
CB D:ASP42C 4.5 25.1 1.0
CB D:ASN42E 4.6 34.2 1.0
N D:ASN42F 4.6 35.0 1.0
C D:ASP42C 4.6 22.7 1.0
HG3 D:GLU42N 4.6 33.5 1.0
N D:THR42D 4.7 26.1 1.0
C D:ASN42E 4.7 33.8 1.0
HB3 D:TRP42I 4.8 29.6 1.0
HB2 D:ASP42C 4.8 30.1 1.0
C D:ILE42J 4.8 26.9 1.0
HB3 D:ASP42G 4.8 35.0 1.0
CA D:ASN42E 4.8 35.0 1.0
HG2 D:GLU42N 4.8 33.5 1.0
N D:GLY42H 4.8 27.2 1.0
CA D:ASP42G 4.9 31.6 1.0
HG2 D:GLU42K 4.9 38.4 1.0
HB2 D:GLU42N 4.9 36.4 1.0
O D:HOH340 4.9 38.8 1.0
HG3 D:GLU42K 4.9 38.4 1.0
HB3 D:ASN42E 4.9 41.1 1.0

Terbium binding site 8 out of 9 in 6y1r

Go back to Terbium Binding Sites List in 6y1r
Terbium binding site 8 out of 9 in the NB22-Lbt


Mono view


Stereo pair view

A full contact list of Terbium with other atoms in the Tb binding site number 8 of NB22-Lbt within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Tb201

b:36.5
occ:0.55
OD1 E:ASP42C 2.2 42.0 1.0
OD1 E:ASN42E 2.2 63.8 1.0
O E:TRP42I 2.3 38.8 1.0
HD21 E:ASN42E 2.3 80.2 1.0
OE1 E:GLU42K 2.4 40.6 1.0
OE1 E:GLU42N 2.5 42.1 1.0
OE2 E:GLU42K 2.5 38.4 1.0
OE2 E:GLU42N 2.6 38.0 1.0
CG E:ASN42E 2.6 63.6 1.0
ND2 E:ASN42E 2.6 66.8 1.0
OD1 E:ASP42G 2.7 49.2 1.0
CD E:GLU42K 2.8 42.2 1.0
CD E:GLU42N 2.8 41.5 1.0
CG E:ASP42G 3.2 50.6 1.0
OD2 E:ASP42G 3.3 51.1 1.0
HD22 E:ASN42E 3.3 80.2 1.0
CG E:ASP42C 3.4 37.0 1.0
C E:TRP42I 3.5 40.9 1.0
HA E:ASP42C 3.7 44.7 1.0
HA E:ILE42J 3.7 48.1 1.0
H E:GLU42K 3.7 47.3 1.0
H E:TRP42I 3.8 54.4 1.0
CB E:ASN42E 3.9 60.0 1.0
HB3 E:ASN42E 3.9 72.0 1.0
H E:ASP42G 3.9 55.3 1.0
O E:HOH310 4.1 40.4 1.0
HB2 E:TRP42I 4.1 57.1 1.0
OD2 E:ASP42C 4.2 30.6 1.0
CG E:GLU42K 4.3 46.7 1.0
CA E:ASP42C 4.3 37.3 1.0
N E:GLU42K 4.3 39.4 1.0
CG E:GLU42N 4.3 42.4 1.0
N E:ILE42J 4.3 40.8 1.0
N E:TRP42I 4.4 45.3 1.0
CA E:TRP42I 4.4 45.8 1.0
CB E:ASP42C 4.4 39.1 1.0
CA E:ILE42J 4.4 40.1 1.0
H E:ASN42F 4.4 57.9 1.0
C E:ASP42C 4.6 36.4 1.0
HB2 E:ASN42E 4.6 72.0 1.0
CB E:ASP42G 4.6 49.0 1.0
N E:ASN42E 4.6 55.2 1.0
HG3 E:GLU42N 4.6 50.8 1.0
HG2 E:GLU42K 4.6 56.0 1.0
CA E:ASN42E 4.7 55.6 1.0
N E:ASP42G 4.7 46.0 1.0
H E:ASN42E 4.7 66.2 1.0
HD13 E:ILE42J 4.7 56.3 1.0
CB E:TRP42I 4.7 47.6 1.0
HG3 E:GLU42K 4.7 56.0 1.0
HB3 E:ASP42G 4.7 58.8 1.0
HB2 E:ASP42C 4.7 46.9 1.0
N E:ASN42F 4.8 48.2 1.0
HG2 E:GLU42N 4.8 50.8 1.0
N E:THR42D 4.8 41.9 1.0
C E:ILE42J 4.8 39.4 1.0
H E:THR42D 4.8 50.2 1.0
O E:GLU42K 4.9 45.1 1.0
HB3 E:TRP42I 4.9 57.1 1.0
C E:THR42D 4.9 56.1 1.0
C E:ASN42E 5.0 52.6 1.0
HB3 E:GLU42K 5.0 56.7 1.0

Terbium binding site 9 out of 9 in 6y1r

Go back to Terbium Binding Sites List in 6y1r
Terbium binding site 9 out of 9 in the NB22-Lbt


Mono view


Stereo pair view

A full contact list of Terbium with other atoms in the Tb binding site number 9 of NB22-Lbt within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Tb202

b:34.6
occ:0.39
HA2 E:GLY42H 1.5 56.1 1.0
CA E:GLY42H 1.6 46.7 1.0
N E:GLY42H 1.7 50.8 1.0
C E:GLY42H 2.3 42.0 1.0
OD2 E:ASP42C 2.3 30.6 1.0
HA3 E:GLY42H 2.5 56.1 1.0
O E:HOH348 2.6 29.9 1.0
O E:HOH345 2.7 41.5 1.0
O E:HOH310 2.8 40.4 1.0
HB C:ILE42J 2.8 53.5 1.0
N E:TRP42I 2.9 45.3 1.0
H E:TRP42I 2.9 54.4 1.0
C E:ASP42G 3.0 49.8 1.0
O E:GLY42H 3.0 42.6 1.0
H E:ASP42G 3.2 55.3 1.0
CG E:ASP42C 3.2 37.0 1.0
HG13 C:ILE42J 3.3 54.5 1.0
N E:ASP42G 3.5 46.0 1.0
HG12 C:ILE42J 3.6 54.5 1.0
CB C:ILE42J 3.6 44.6 1.0
CG1 C:ILE42J 3.7 45.4 1.0
OD1 E:ASP42G 3.8 49.2 1.0
OD1 E:ASP42C 3.8 42.0 1.0
O E:ASP42G 3.8 49.5 1.0
CA E:ASP42G 3.9 47.6 1.0
HA E:ASN42F 3.9 55.0 1.0
HB2 E:ASP42C 4.2 46.9 1.0
CB E:ASP42C 4.2 39.1 1.0
H C:ILE42J 4.2 48.1 1.0
CA E:TRP42I 4.3 45.8 1.0
C E:ASN42F 4.3 46.4 1.0
HG21 C:ILE42J 4.3 53.3 1.0
HB3 E:ASP42C 4.3 46.9 1.0
O E:TRP42I 4.4 38.8 1.0
CG2 C:ILE42J 4.4 44.4 1.0
HA E:ASP42G 4.5 57.2 1.0
HG22 C:ILE42J 4.6 53.3 1.0
HA E:TRP42I 4.6 54.9 1.0
CA E:ASN42F 4.6 45.8 1.0
N C:ILE42J 4.7 40.1 1.0
OD1 E:ASN42F 4.7 39.6 1.0
C E:TRP42I 4.7 40.9 1.0
CA C:ILE42J 4.7 42.6 1.0
CG E:ASP42G 4.8 50.6 1.0
CB E:ASP42G 4.9 49.0 1.0

Reference:

G.Pompidor, S.Zimmermann, C.Loew, T.Schneider. Engineered Nanobodies with A Lanthanide Binding Motif For Crystallographic Phasing To Be Published.
Page generated: Wed Mar 3 15:44:56 2021

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy