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Terbium in PDB 6y1r: NB22-Lbt

Protein crystallography data

The structure of NB22-Lbt, PDB code: 6y1r was solved by G.Pompidor, S.Zimmermann, C.Loew, T.Schneider, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 80.13 / 1.85
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 45.469, 49.425, 81.349, 91.71, 99.18, 102.61
R / Rfree (%) 20.4 / 23.5

Terbium Binding Sites:

The binding sites of Terbium atom in the NB22-Lbt (pdb code 6y1r). This binding sites where shown within 5.0 Angstroms radius around Terbium atom.
In total 9 binding sites of Terbium where determined in the NB22-Lbt, PDB code: 6y1r:
Jump to Terbium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9;

Terbium binding site 1 out of 9 in 6y1r

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Terbium binding site 1 out of 9 in the NB22-Lbt


Mono view


Stereo pair view

A full contact list of Terbium with other atoms in the Tb binding site number 1 of NB22-Lbt within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Tb201

b:28.4
occ:0.78
OE2 A:GLU42N 2.5 23.4 1.0
OD1 A:ASP42G 2.5 29.3 1.0
O A:TRP42I 2.6 22.8 1.0
OE1 A:GLU42N 2.6 23.1 1.0
OD1 A:ASN42E 2.6 28.3 1.0
OD1 A:ASP42C 2.6 21.4 1.0
OE1 A:GLU42K 2.7 23.9 1.0
OE2 A:GLU42K 2.7 23.4 1.0
CD A:GLU42N 2.9 25.1 1.0
OD2 A:ASP42G 3.0 31.2 1.0
CD A:GLU42K 3.0 24.7 1.0
CG A:ASP42G 3.0 31.8 1.0
HD1 A:TRP42I 3.5 32.9 1.0
CG A:ASN42E 3.5 32.8 1.0
CG A:ASP42C 3.6 23.8 1.0
H A:ASP42G 3.6 37.7 1.0
HA A:ASP42C 3.6 30.2 1.0
HA A:ILE42J 3.7 30.2 1.0
HD21 A:ASN42E 3.7 40.9 1.0
H A:TRP42I 3.7 24.2 1.0
C A:TRP42I 3.7 26.6 1.0
H A:ASN42E 3.7 38.4 1.0
H A:GLU42K 3.9 30.1 1.0
ND2 A:ASN42E 4.0 34.0 1.0
OD2 A:ASP42C 4.2 21.9 1.0
CD1 A:TRP42I 4.3 27.4 1.0
CA A:ASP42C 4.3 25.1 1.0
H A:ASN42F 4.3 40.4 1.0
CG A:GLU42N 4.3 28.2 1.0
CB A:ASP42G 4.4 31.6 1.0
N A:ASP42G 4.4 31.4 1.0
CA A:ILE42J 4.4 25.1 1.0
N A:GLU42K 4.4 25.1 1.0
CB A:ASP42C 4.4 25.1 1.0
N A:TRP42I 4.4 20.2 1.0
N A:ILE42J 4.5 25.4 1.0
HD13 A:ILE42J 4.5 31.6 1.0
H A:GLY42H 4.5 33.6 1.0
CG A:GLU42K 4.5 26.5 1.0
N A:ASN42E 4.6 32.0 1.0
HB2 A:ASP42C 4.6 30.1 1.0
H A:THR42D 4.6 25.6 1.0
C A:ASP42C 4.6 20.4 1.0
HG3 A:GLU42N 4.6 33.9 1.0
HB3 A:ASP42G 4.6 37.9 1.0
N A:ASN42F 4.7 33.6 1.0
CA A:TRP42I 4.7 23.2 1.0
CB A:ASN42E 4.7 30.3 1.0
C A:ILE42J 4.8 25.6 1.0
HD22 A:ASN42E 4.8 40.9 1.0
N A:THR42D 4.8 21.3 1.0
HG2 A:GLU42N 4.8 33.9 1.0
HE1 A:TRP42I 4.8 33.5 1.0
CA A:ASP42G 4.9 31.1 1.0
O A:HOH302 4.9 29.9 1.0
HB2 A:GLU42N 4.9 37.1 1.0
C A:ASN42E 4.9 35.5 1.0
HG2 A:GLU42K 4.9 31.8 1.0
HG3 A:GLU42K 4.9 31.8 1.0
N A:GLY42H 4.9 28.0 1.0
NE1 A:TRP42I 5.0 27.9 1.0
CA A:ASN42E 5.0 32.4 1.0

Terbium binding site 2 out of 9 in 6y1r

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Terbium binding site 2 out of 9 in the NB22-Lbt


Mono view


Stereo pair view

A full contact list of Terbium with other atoms in the Tb binding site number 2 of NB22-Lbt within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Tb202

b:28.3
occ:0.73
OE2 D:GLU61 2.5 22.1 1.0
OD1 D:ASP62 2.6 27.8 1.0
OD1 A:ASP62 2.6 24.5 1.0
O D:HOH352 2.6 29.9 1.0
O D:HOH347 2.6 33.4 1.0
OE1 A:GLU61 2.7 29.0 1.0
OE2 A:GLU61 2.7 28.7 1.0
OE1 D:GLU61 2.7 38.6 1.0
O D:HOH342 2.7 35.5 1.0
CD D:GLU61 2.9 29.7 1.0
CD A:GLU61 3.0 30.7 1.0
CG D:ASP62 3.5 29.3 1.0
CG A:ASP62 3.5 27.9 1.0
H A:ASP62 3.7 27.1 1.0
H D:ASP62 3.7 31.0 1.0
H D:SER63 3.8 30.9 1.0
OD2 D:ASP62 3.8 24.7 1.0
H A:SER63 3.8 32.9 1.0
OD2 A:ASP62 3.9 25.3 1.0
HB3 A:SER63 4.2 35.1 1.0
HB3 D:SER63 4.2 35.2 1.0
N A:ASP62 4.3 22.6 1.0
N D:ASP62 4.4 25.9 1.0
CG D:GLU61 4.4 28.6 1.0
HG A:SER63 4.5 37.3 1.0
CG A:GLU61 4.5 28.7 1.0
N A:SER63 4.5 27.4 1.0
N D:SER63 4.6 25.7 1.0
HG D:SER63 4.7 39.1 1.0
HG3 D:GLU61 4.7 34.3 1.0
CB A:ASP62 4.8 26.5 1.0
CB D:ASP62 4.8 28.2 1.0
O D:HOH332 4.8 44.4 1.0
O A:HOH339 4.8 37.4 1.0
HA D:GLU61 4.9 26.0 1.0
HG2 D:GLU61 4.9 34.3 1.0
HG3 A:GLU61 4.9 34.5 1.0
HG2 A:GLU61 4.9 34.5 1.0
CA A:ASP62 5.0 25.3 1.0
CB A:SER63 5.0 29.2 1.0

Terbium binding site 3 out of 9 in 6y1r

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Terbium binding site 3 out of 9 in the NB22-Lbt


Mono view


Stereo pair view

A full contact list of Terbium with other atoms in the Tb binding site number 3 of NB22-Lbt within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Tb201

b:40.2
occ:0.68
OD1 B:ASP42C 2.6 31.9 1.0
OE1 B:GLU42N 2.6 32.6 1.0
O B:TRP42I 2.7 36.7 1.0
OE2 B:GLU42N 2.7 39.8 1.0
OE2 B:GLU42K 2.7 36.4 1.0
OD1 B:ASP42G 2.7 47.5 1.0
OE1 B:GLU42K 2.7 37.2 1.0
OD1 B:ASN42E 2.7 50.9 1.0
HD21 B:ASN42E 2.8 65.7 1.0
CD B:GLU42N 3.0 37.0 1.0
CD B:GLU42K 3.0 37.0 1.0
CG B:ASP42G 3.2 44.1 1.0
CG B:ASN42E 3.2 51.7 1.0
ND2 B:ASN42E 3.3 54.8 1.0
OD2 B:ASP42G 3.3 43.2 1.0
H B:ASP42G 3.3 58.5 1.0
C B:TRP42I 3.6 38.8 1.0
HA B:ASP42C 3.7 48.4 1.0
H B:TRP42I 3.7 48.7 1.0
HA B:ILE42J 3.7 39.6 1.0
CG B:ASP42C 3.8 36.0 1.0
H B:GLU42K 3.9 38.7 1.0
H B:ASN42E 4.0 62.9 1.0
HD22 B:ASN42E 4.0 65.7 1.0
H B:ASN42F 4.0 60.8 1.0
HB2 B:TRP42I 4.1 52.9 1.0
N B:ASP42G 4.2 48.7 1.0
N B:TRP42I 4.4 40.6 1.0
CB B:ASP42G 4.4 44.2 1.0
N B:ILE42J 4.4 35.8 1.0
CG B:GLU42N 4.4 37.5 1.0
H B:THR42D 4.4 53.6 1.0
N B:ASN42F 4.4 50.7 1.0
CA B:ILE42J 4.4 33.0 1.0
N B:GLU42K 4.5 32.3 1.0
CA B:ASP42C 4.5 40.4 1.0
CA B:TRP42I 4.5 41.9 1.0
HB3 B:ASP42G 4.5 53.0 1.0
N B:ASN42E 4.5 52.4 1.0
HD13 B:ILE42J 4.5 37.2 1.0
CG B:GLU42K 4.5 39.3 1.0
CB B:ASN42E 4.6 49.5 1.0
OD2 B:ASP42C 4.6 36.5 1.0
HG3 B:GLU42N 4.7 44.9 1.0
O B:HOH332 4.7 46.8 1.0
N B:THR42D 4.7 44.7 1.0
CB B:ASP42C 4.7 38.1 1.0
C B:ASP42C 4.7 43.6 1.0
H B:GLY42H 4.7 54.3 1.0
CA B:ASP42G 4.7 45.4 1.0
CB B:TRP42I 4.8 44.1 1.0
C B:ASN42E 4.8 50.8 1.0
C B:ILE42J 4.9 31.7 1.0
CA B:ASN42E 4.9 50.7 1.0
HB2 B:GLU42N 4.9 41.1 1.0
HG2 B:GLU42K 4.9 47.2 1.0
HG2 B:GLU42N 4.9 44.9 1.0
HB3 B:ASN42E 4.9 59.4 1.0
N B:GLY42H 5.0 45.2 1.0
O B:HOH329 5.0 45.5 1.0

Terbium binding site 4 out of 9 in 6y1r

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Terbium binding site 4 out of 9 in the NB22-Lbt


Mono view


Stereo pair view

A full contact list of Terbium with other atoms in the Tb binding site number 4 of NB22-Lbt within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Tb201

b:40.2
occ:0.63
OD1 C:ASP42G 2.6 46.5 1.0
OD1 C:ASP42C 2.6 38.4 1.0
OE1 C:GLU42N 2.7 48.2 1.0
O C:TRP42I 2.7 40.4 1.0
OE2 C:GLU42N 2.7 43.7 1.0
OE1 C:GLU42K 2.7 33.7 1.0
OE2 C:GLU42K 2.7 40.4 1.0
OD1 C:ASN42E 2.7 43.1 1.0
CD C:GLU42N 3.0 47.8 1.0
CD C:GLU42K 3.1 37.3 1.0
CG C:ASP42G 3.4 48.1 1.0
C C:TRP42I 3.4 42.7 1.0
HA C:ASP42C 3.5 53.0 1.0
OD2 C:ASP42G 3.5 46.4 1.0
HA C:ILE42J 3.6 51.1 1.0
H C:TRP42I 3.6 50.2 1.0
HB2 C:TRP42I 3.6 57.2 1.0
CG C:ASP42C 3.7 42.0 1.0
H C:ASP42G 3.7 57.4 1.0
CG C:ASN42E 3.8 45.9 1.0
H C:GLU42K 3.9 55.2 1.0
H C:ASN42E 3.9 56.9 1.0
HD21 C:ASN42E 3.9 57.5 1.0
HD13 C:ILE42J 4.1 53.7 1.0
H C:THR42D 4.1 53.5 1.0
N C:TRP42I 4.2 41.8 1.0
N C:ILE42J 4.2 40.1 1.0
ND2 C:ASN42E 4.2 48.0 1.0
CA C:TRP42I 4.2 43.7 1.0
CA C:ASP42C 4.2 44.2 1.0
CA C:ILE42J 4.3 42.6 1.0
H C:ASN42F 4.4 59.5 1.0
CB C:TRP42I 4.4 47.7 1.0
N C:GLU42K 4.4 46.0 1.0
OD2 C:ASP42C 4.4 46.3 1.0
N C:THR42D 4.5 44.5 1.0
CG C:GLU42N 4.5 51.5 1.0
CB C:ASP42C 4.5 43.8 1.0
N C:ASP42G 4.5 47.8 1.0
C C:ASP42C 4.5 41.6 1.0
N C:ASN42E 4.6 47.4 1.0
CG C:GLU42K 4.6 41.2 1.0
CB C:ASP42G 4.7 48.0 1.0
O C:GLU42K 4.7 46.8 1.0
HB3 C:TRP42I 4.8 57.2 1.0
C C:ILE42J 4.8 44.8 1.0
HB2 C:ASP42C 4.8 52.5 1.0
HB2 C:GLU42N 4.8 65.7 1.0
HG3 C:GLU42N 4.8 61.8 1.0
N C:ASN42F 4.8 49.6 1.0
H C:GLY42H 4.9 55.4 1.0
H C:ILE42J 5.0 48.1 1.0
HG2 C:GLU42K 5.0 49.5 1.0
CD1 C:ILE42J 5.0 44.7 1.0

Terbium binding site 5 out of 9 in 6y1r

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Terbium binding site 5 out of 9 in the NB22-Lbt


Mono view


Stereo pair view

A full contact list of Terbium with other atoms in the Tb binding site number 5 of NB22-Lbt within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Tb202

b:40.4
occ:0.39
H C:ASP42M 2.3 73.3 1.0
HG3 C:GLU42N 2.6 61.8 1.0
O C:GLU42K 2.7 46.8 1.0
HA3 C:GLY42L 2.7 67.0 1.0
O C:HOH306 2.7 46.9 1.0
O C:HOH357 2.7 56.9 1.0
H C:GLU42N 2.8 72.5 1.0
N C:ASP42M 2.8 61.1 1.0
O C:HOH359 3.0 29.9 1.0
HB2 C:ASP42M 3.2 76.4 1.0
OE2 C:GLU42K 3.4 40.4 1.0
CA C:GLY42L 3.4 55.8 1.0
C C:GLY42L 3.4 56.6 1.0
N C:GLU42N 3.4 60.4 1.0
CG C:GLU42N 3.5 51.5 1.0
C C:GLU42K 3.6 49.6 1.0
OE2 C:GLU42N 3.6 43.7 1.0
CD C:GLU42N 3.7 47.8 1.0
CA C:ASP42M 3.7 62.6 1.0
HG2 C:GLU42K 3.8 49.5 1.0
CB C:ASP42M 3.9 63.7 1.0
HB2 C:GLU42N 4.0 65.7 1.0
C C:ASP42M 4.0 61.4 1.0
N C:GLY42L 4.0 54.0 1.0
CB C:GLU42N 4.1 54.8 1.0
HG2 C:GLU42N 4.2 61.8 1.0
HA2 C:GLY42L 4.2 67.0 1.0
CD C:GLU42K 4.2 37.3 1.0
CA C:GLU42N 4.4 59.6 1.0
HB C:THR42D 4.4 57.7 1.0
OE1 C:GLU42N 4.5 48.2 1.0
O C:GLY42L 4.5 52.4 1.0
H C:GLU42K 4.5 55.2 1.0
CG C:GLU42K 4.5 41.2 1.0
HB3 C:ASP42M 4.6 76.4 1.0
HA C:ASP42M 4.6 75.1 1.0
OD1 C:ASP42M 4.7 64.5 1.0
H C:GLY42L 4.8 64.8 1.0
CG C:ASP42M 4.9 64.4 1.0
CA C:GLU42K 4.9 46.7 1.0
HA C:GLU42N 4.9 71.5 1.0

Terbium binding site 6 out of 9 in 6y1r

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Terbium binding site 6 out of 9 in the NB22-Lbt


Mono view


Stereo pair view

A full contact list of Terbium with other atoms in the Tb binding site number 6 of NB22-Lbt within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Tb205

b:33.8
occ:0.82
OD1 E:ASP62 2.5 24.4 1.0
OD1 C:ASP62 2.6 23.9 1.0
OE2 C:GLU61 2.6 30.7 1.0
O E:HOH357 2.7 34.5 1.0
O E:HOH327 2.7 37.6 1.0
OE2 E:GLU61 2.7 32.2 1.0
OE1 C:GLU61 2.7 34.5 1.0
O E:HOH349 2.7 37.2 1.0
OE1 E:GLU61 2.8 39.8 1.0
CD C:GLU61 3.0 33.0 1.0
CD E:GLU61 3.1 35.9 1.0
CG E:ASP62 3.4 28.0 1.0
CG C:ASP62 3.5 28.0 1.0
OD2 E:ASP62 3.7 27.3 1.0
H C:ASP62 3.7 28.0 1.0
OD2 C:ASP62 3.7 26.4 1.0
H E:ASP62 3.8 33.2 1.0
H C:SER63 3.8 27.6 1.0
H E:SER63 3.9 34.6 1.0
HB3 E:SER63 4.1 37.2 1.0
HB3 C:SER63 4.2 32.2 1.0
N C:ASP62 4.4 23.3 1.0
N E:ASP62 4.5 27.7 1.0
HG E:SER63 4.5 37.5 1.0
CG C:GLU61 4.5 33.3 1.0
N C:SER63 4.5 23.0 1.0
N E:SER63 4.6 28.8 1.0
CG E:GLU61 4.6 34.7 1.0
OE2 E:GLU46 4.7 50.4 1.0
HG C:SER63 4.7 37.9 1.0
CB E:ASP62 4.7 27.9 1.0
CB C:ASP62 4.7 28.1 1.0
O E:HOH358 4.8 43.2 1.0
O C:HOH307 4.8 45.0 1.0
HG3 C:GLU61 4.9 40.0 1.0
CB E:SER63 4.9 31.0 1.0
HG3 E:GLU61 4.9 41.6 1.0
OE2 C:GLU46 4.9 60.4 1.0
HG2 C:GLU61 4.9 40.0 1.0
HA C:GLU61 4.9 28.9 1.0
CA C:ASP62 5.0 23.2 1.0
OG E:SER63 5.0 31.3 1.0

Terbium binding site 7 out of 9 in 6y1r

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Terbium binding site 7 out of 9 in the NB22-Lbt


Mono view


Stereo pair view

A full contact list of Terbium with other atoms in the Tb binding site number 7 of NB22-Lbt within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Tb201

b:32.0
occ:0.82
OD1 D:ASP42C 2.5 24.2 1.0
OE2 D:GLU42N 2.6 27.2 1.0
O D:TRP42I 2.6 27.9 1.0
OD1 D:ASN42E 2.6 30.4 1.0
OE1 D:GLU42N 2.6 27.1 1.0
OD1 D:ASP42G 2.6 23.7 1.0
OE1 D:GLU42K 2.6 28.4 1.0
OE2 D:GLU42K 2.7 26.1 1.0
CD D:GLU42N 2.9 27.4 1.0
CD D:GLU42K 3.0 28.6 1.0
HD21 D:ASN42E 3.2 44.5 1.0
CG D:ASP42G 3.2 28.2 1.0
OD2 D:ASP42G 3.3 29.9 1.0
CG D:ASN42E 3.3 33.9 1.0
H D:ASP42G 3.5 39.0 1.0
C D:TRP42I 3.6 26.7 1.0
ND2 D:ASN42E 3.6 37.1 1.0
H D:ASN42E 3.7 39.9 1.0
CG D:ASP42C 3.7 26.6 1.0
HA D:ILE42J 3.7 33.6 1.0
HA D:ASP42C 3.7 24.7 1.0
HB2 D:TRP42I 3.9 29.6 1.0
H D:GLU42K 3.9 28.7 1.0
H D:TRP42I 3.9 26.2 1.0
H D:ASN42F 4.3 42.0 1.0
N D:TRP42I 4.3 21.8 1.0
N D:ASP42G 4.3 32.5 1.0
HD22 D:ASN42E 4.3 44.5 1.0
CG D:GLU42N 4.4 27.9 1.0
CA D:TRP42I 4.4 23.8 1.0
N D:ILE42J 4.4 26.4 1.0
OD2 D:ASP42C 4.4 32.2 1.0
CA D:ASP42C 4.4 20.6 1.0
N D:GLU42K 4.4 23.9 1.0
CA D:ILE42J 4.4 28.0 1.0
N D:ASN42E 4.4 33.3 1.0
HD13 D:ILE42J 4.5 27.6 1.0
CG D:GLU42K 4.5 32.0 1.0
H D:GLY42H 4.5 32.7 1.0
CB D:ASP42G 4.5 29.2 1.0
H D:THR42D 4.5 31.4 1.0
CB D:TRP42I 4.5 24.6 1.0
CB D:ASP42C 4.5 25.1 1.0
CB D:ASN42E 4.6 34.2 1.0
N D:ASN42F 4.6 35.0 1.0
C D:ASP42C 4.6 22.7 1.0
HG3 D:GLU42N 4.6 33.5 1.0
N D:THR42D 4.7 26.1 1.0
C D:ASN42E 4.7 33.8 1.0
HB3 D:TRP42I 4.8 29.6 1.0
HB2 D:ASP42C 4.8 30.1 1.0
C D:ILE42J 4.8 26.9 1.0
HB3 D:ASP42G 4.8 35.0 1.0
CA D:ASN42E 4.8 35.0 1.0
HG2 D:GLU42N 4.8 33.5 1.0
N D:GLY42H 4.8 27.2 1.0
CA D:ASP42G 4.9 31.6 1.0
HG2 D:GLU42K 4.9 38.4 1.0
HB2 D:GLU42N 4.9 36.4 1.0
O D:HOH340 4.9 38.8 1.0
HG3 D:GLU42K 4.9 38.4 1.0
HB3 D:ASN42E 4.9 41.1 1.0

Terbium binding site 8 out of 9 in 6y1r

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Terbium binding site 8 out of 9 in the NB22-Lbt


Mono view


Stereo pair view

A full contact list of Terbium with other atoms in the Tb binding site number 8 of NB22-Lbt within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Tb201

b:36.5
occ:0.55
OD1 E:ASP42C 2.2 42.0 1.0
OD1 E:ASN42E 2.2 63.8 1.0
O E:TRP42I 2.3 38.8 1.0
HD21 E:ASN42E 2.3 80.2 1.0
OE1 E:GLU42K 2.4 40.6 1.0
OE1 E:GLU42N 2.5 42.1 1.0
OE2 E:GLU42K 2.5 38.4 1.0
OE2 E:GLU42N 2.6 38.0 1.0
CG E:ASN42E 2.6 63.6 1.0
ND2 E:ASN42E 2.6 66.8 1.0
OD1 E:ASP42G 2.7 49.2 1.0
CD E:GLU42K 2.8 42.2 1.0
CD E:GLU42N 2.8 41.5 1.0
CG E:ASP42G 3.2 50.6 1.0
OD2 E:ASP42G 3.3 51.1 1.0
HD22 E:ASN42E 3.3 80.2 1.0
CG E:ASP42C 3.4 37.0 1.0
C E:TRP42I 3.5 40.9 1.0
HA E:ASP42C 3.7 44.7 1.0
HA E:ILE42J 3.7 48.1 1.0
H E:GLU42K 3.7 47.3 1.0
H E:TRP42I 3.8 54.4 1.0
CB E:ASN42E 3.9 60.0 1.0
HB3 E:ASN42E 3.9 72.0 1.0
H E:ASP42G 3.9 55.3 1.0
O E:HOH310 4.1 40.4 1.0
HB2 E:TRP42I 4.1 57.1 1.0
OD2 E:ASP42C 4.2 30.6 1.0
CG E:GLU42K 4.3 46.7 1.0
CA E:ASP42C 4.3 37.3 1.0
N E:GLU42K 4.3 39.4 1.0
CG E:GLU42N 4.3 42.4 1.0
N E:ILE42J 4.3 40.8 1.0
N E:TRP42I 4.4 45.3 1.0
CA E:TRP42I 4.4 45.8 1.0
CB E:ASP42C 4.4 39.1 1.0
CA E:ILE42J 4.4 40.1 1.0
H E:ASN42F 4.4 57.9 1.0
C E:ASP42C 4.6 36.4 1.0
HB2 E:ASN42E 4.6 72.0 1.0
CB E:ASP42G 4.6 49.0 1.0
N E:ASN42E 4.6 55.2 1.0
HG3 E:GLU42N 4.6 50.8 1.0
HG2 E:GLU42K 4.6 56.0 1.0
CA E:ASN42E 4.7 55.6 1.0
N E:ASP42G 4.7 46.0 1.0
H E:ASN42E 4.7 66.2 1.0
HD13 E:ILE42J 4.7 56.3 1.0
CB E:TRP42I 4.7 47.6 1.0
HG3 E:GLU42K 4.7 56.0 1.0
HB3 E:ASP42G 4.7 58.8 1.0
HB2 E:ASP42C 4.7 46.9 1.0
N E:ASN42F 4.8 48.2 1.0
HG2 E:GLU42N 4.8 50.8 1.0
N E:THR42D 4.8 41.9 1.0
C E:ILE42J 4.8 39.4 1.0
H E:THR42D 4.8 50.2 1.0
O E:GLU42K 4.9 45.1 1.0
HB3 E:TRP42I 4.9 57.1 1.0
C E:THR42D 4.9 56.1 1.0
C E:ASN42E 5.0 52.6 1.0
HB3 E:GLU42K 5.0 56.7 1.0

Terbium binding site 9 out of 9 in 6y1r

Go back to Terbium Binding Sites List in 6y1r
Terbium binding site 9 out of 9 in the NB22-Lbt


Mono view


Stereo pair view

A full contact list of Terbium with other atoms in the Tb binding site number 9 of NB22-Lbt within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Tb202

b:34.6
occ:0.39
HA2 E:GLY42H 1.5 56.1 1.0
CA E:GLY42H 1.6 46.7 1.0
N E:GLY42H 1.7 50.8 1.0
C E:GLY42H 2.3 42.0 1.0
OD2 E:ASP42C 2.3 30.6 1.0
HA3 E:GLY42H 2.5 56.1 1.0
O E:HOH348 2.6 29.9 1.0
O E:HOH345 2.7 41.5 1.0
O E:HOH310 2.8 40.4 1.0
HB C:ILE42J 2.8 53.5 1.0
N E:TRP42I 2.9 45.3 1.0
H E:TRP42I 2.9 54.4 1.0
C E:ASP42G 3.0 49.8 1.0
O E:GLY42H 3.0 42.6 1.0
H E:ASP42G 3.2 55.3 1.0
CG E:ASP42C 3.2 37.0 1.0
HG13 C:ILE42J 3.3 54.5 1.0
N E:ASP42G 3.5 46.0 1.0
HG12 C:ILE42J 3.6 54.5 1.0
CB C:ILE42J 3.6 44.6 1.0
CG1 C:ILE42J 3.7 45.4 1.0
OD1 E:ASP42G 3.8 49.2 1.0
OD1 E:ASP42C 3.8 42.0 1.0
O E:ASP42G 3.8 49.5 1.0
CA E:ASP42G 3.9 47.6 1.0
HA E:ASN42F 3.9 55.0 1.0
HB2 E:ASP42C 4.2 46.9 1.0
CB E:ASP42C 4.2 39.1 1.0
H C:ILE42J 4.2 48.1 1.0
CA E:TRP42I 4.3 45.8 1.0
C E:ASN42F 4.3 46.4 1.0
HG21 C:ILE42J 4.3 53.3 1.0
HB3 E:ASP42C 4.3 46.9 1.0
O E:TRP42I 4.4 38.8 1.0
CG2 C:ILE42J 4.4 44.4 1.0
HA E:ASP42G 4.5 57.2 1.0
HG22 C:ILE42J 4.6 53.3 1.0
HA E:TRP42I 4.6 54.9 1.0
CA E:ASN42F 4.6 45.8 1.0
N C:ILE42J 4.7 40.1 1.0
OD1 E:ASN42F 4.7 39.6 1.0
C E:TRP42I 4.7 40.9 1.0
CA C:ILE42J 4.7 42.6 1.0
CG E:ASP42G 4.8 50.6 1.0
CB E:ASP42G 4.9 49.0 1.0

Reference:

G.Pompidor, S.Zimmermann, C.Loew, T.Schneider. Engineered Nanobodies with A Lanthanide Binding Motif For Crystallographic Phasing To Be Published.
Page generated: Wed Mar 3 15:44:56 2021

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