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Terbium in PDB 6yxg: Cryogenic Human Adiponectin Receptor 2 (ADIPOR2) with Tb-XO4 Ligand Determined By Serial Crystallography (Ssx) Using Crystaldirect

Protein crystallography data

The structure of Cryogenic Human Adiponectin Receptor 2 (ADIPOR2) with Tb-XO4 Ligand Determined By Serial Crystallography (Ssx) Using Crystaldirect, PDB code: 6yxg was solved by R.D.Healey, S.Basu, A.S.Humm, C.Leyrat, F.Dupeux, A.Pica, S.Granier, J.A.Marquez, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.00 / 3.01
Space group P 21 2 21
Cell size a, b, c (Å), α, β, γ (°) 74.61, 100.69, 110.51, 90, 90, 90
R / Rfree (%) 21.3 / 25.2

Other elements in 6yxg:

The structure of Cryogenic Human Adiponectin Receptor 2 (ADIPOR2) with Tb-XO4 Ligand Determined By Serial Crystallography (Ssx) Using Crystaldirect also contains other interesting chemical elements:

Zinc (Zn) 1 atom

Terbium Binding Sites:

The binding sites of Terbium atom in the Cryogenic Human Adiponectin Receptor 2 (ADIPOR2) with Tb-XO4 Ligand Determined By Serial Crystallography (Ssx) Using Crystaldirect (pdb code 6yxg). This binding sites where shown within 5.0 Angstroms radius around Terbium atom.
In total 2 binding sites of Terbium where determined in the Cryogenic Human Adiponectin Receptor 2 (ADIPOR2) with Tb-XO4 Ligand Determined By Serial Crystallography (Ssx) Using Crystaldirect, PDB code: 6yxg:
Jump to Terbium binding site number: 1; 2;

Terbium binding site 1 out of 2 in 6yxg

Go back to Terbium Binding Sites List in 6yxg
Terbium binding site 1 out of 2 in the Cryogenic Human Adiponectin Receptor 2 (ADIPOR2) with Tb-XO4 Ligand Determined By Serial Crystallography (Ssx) Using Crystaldirect


Mono view


Stereo pair view

A full contact list of Terbium with other atoms in the Tb binding site number 1 of Cryogenic Human Adiponectin Receptor 2 (ADIPOR2) with Tb-XO4 Ligand Determined By Serial Crystallography (Ssx) Using Crystaldirect within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Tb302

b:231.5
occ:1.00
TB H:7MT302 0.0 231.5 1.0
O26 H:7MT302 2.2 113.8 1.0
N23 H:7MT302 2.3 110.8 1.0
N06 H:7MT302 2.6 106.3 1.0
N17 H:7MT302 2.8 105.3 1.0
C24 H:7MT302 2.9 113.3 1.0
C22 H:7MT302 2.9 112.0 1.0
N02 H:7MT302 3.0 106.3 1.0
O28 H:7MT302 3.1 106.7 1.0
N09 H:7MT302 3.2 107.0 1.0
C07 H:7MT302 3.3 106.0 1.0
C30 H:7MT302 3.3 105.8 1.0
C11 H:7MT302 3.3 109.8 1.0
C10 H:7MT302 3.5 105.4 1.0
C04 H:7MT302 3.6 106.3 1.0
C05 H:7MT302 3.6 106.3 1.0
C29 H:7MT302 3.8 108.3 1.0
C16 H:7MT302 3.8 105.5 1.0
C08 H:7MT302 3.8 106.3 1.0
C18 H:7MT302 3.9 106.3 1.0
O25 H:7MT302 4.0 113.5 1.0
C03 H:7MT302 4.1 106.3 1.0
C01 H:7MT302 4.1 106.2 1.0
C21 H:7MT302 4.1 111.5 1.0
C19 H:7MT302 4.4 110.3 1.0
C20 H:7MT302 4.7 111.0 1.0
C13 H:7MT302 4.9 105.1 1.0

Terbium binding site 2 out of 2 in 6yxg

Go back to Terbium Binding Sites List in 6yxg
Terbium binding site 2 out of 2 in the Cryogenic Human Adiponectin Receptor 2 (ADIPOR2) with Tb-XO4 Ligand Determined By Serial Crystallography (Ssx) Using Crystaldirect


Mono view


Stereo pair view

A full contact list of Terbium with other atoms in the Tb binding site number 2 of Cryogenic Human Adiponectin Receptor 2 (ADIPOR2) with Tb-XO4 Ligand Determined By Serial Crystallography (Ssx) Using Crystaldirect within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Tb303

b:300.0
occ:1.00
TB H:7MT303 0.0 300.0 1.0
N09 H:7MT303 1.9 172.6 1.0
N06 H:7MT303 1.9 172.0 1.0
N02 H:7MT303 1.9 171.9 1.0
C03 H:7MT303 2.3 172.3 1.0
C01 H:7MT303 2.5 172.1 1.0
C07 H:7MT303 2.6 172.1 1.0
C08 H:7MT303 2.6 172.4 1.0
C04 H:7MT303 2.7 171.8 1.0
C05 H:7MT303 2.8 171.8 1.0
C30 H:7MT303 3.0 171.6 1.0
C29 H:7MT303 3.1 173.1 1.0
N17 H:7MT303 3.2 171.2 1.0
C10 H:7MT303 3.6 171.2 1.0
C11 H:7MT303 3.9 173.6 1.0
N23 H:7MT303 3.9 174.0 1.0
O28 H:7MT303 4.1 171.3 1.0
C16 H:7MT303 4.3 171.1 1.0
O H:GLY42 4.5 91.1 1.0
C18 H:7MT303 4.7 171.2 1.0
C13 H:7MT303 4.9 170.9 1.0
C19 H:7MT303 5.0 173.7 1.0

Reference:

R.D.Healey, S.Basu, A.S.Humm, C.Leyrat, F.Dupeux, A.Pica, S.Granier, J.A.Marquez. Rapid, Automated Serial Crystallographic Analysis of Membrane Proteins Through Crystaldirect To Be Published.
Page generated: Mon Jul 12 16:13:00 2021

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