Atomistry » Terbium » PDB 6xzf-7p3h » 7p3h
Atomistry »
  Terbium »
    PDB 6xzf-7p3h »
      7p3h »

Terbium in PDB 7p3h: Peptide HC02 - Lanthanide Selectivity Engineered Into Structurally Characterized Designed Coiled Coils

Protein crystallography data

The structure of Peptide HC02 - Lanthanide Selectivity Engineered Into Structurally Characterized Designed Coiled Coils, PDB code: 7p3h was solved by S.A.White, A.F.A.Peacock, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 41.50 / 2.10
Space group H 3
Cell size a, b, c (Å), α, β, γ (°) 103.04, 103.04, 46.88, 90, 90, 120
R / Rfree (%) 21 / 23.4

Other elements in 7p3h:

The structure of Peptide HC02 - Lanthanide Selectivity Engineered Into Structurally Characterized Designed Coiled Coils also contains other interesting chemical elements:

Zinc (Zn) 3 atoms

Terbium Binding Sites:

The binding sites of Terbium atom in the Peptide HC02 - Lanthanide Selectivity Engineered Into Structurally Characterized Designed Coiled Coils (pdb code 7p3h). This binding sites where shown within 5.0 Angstroms radius around Terbium atom.
In total 3 binding sites of Terbium where determined in the Peptide HC02 - Lanthanide Selectivity Engineered Into Structurally Characterized Designed Coiled Coils, PDB code: 7p3h:
Jump to Terbium binding site number: 1; 2; 3;

Terbium binding site 1 out of 3 in 7p3h

Go back to Terbium Binding Sites List in 7p3h
Terbium binding site 1 out of 3 in the Peptide HC02 - Lanthanide Selectivity Engineered Into Structurally Characterized Designed Coiled Coils


Mono view


Stereo pair view

A full contact list of Terbium with other atoms in the Tb binding site number 1 of Peptide HC02 - Lanthanide Selectivity Engineered Into Structurally Characterized Designed Coiled Coils within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Tb101

b:49.5
occ:1.00
OD1 B:ASN12 2.3 55.4 1.0
OD2 B:ASP16 2.3 51.3 1.0
OD1 A:ASN12 2.3 40.7 1.0
OD1 B:ASP16 2.4 62.4 1.0
OD1 C:ASN12 2.4 53.0 1.0
OD1 A:ASP16 2.4 48.5 1.0
OD2 A:ASP16 2.4 50.2 1.0
OD2 C:ASP16 2.5 59.2 1.0
CG B:ASP16 2.6 59.9 1.0
OD1 C:ASP16 2.6 54.2 1.0
CG A:ASP16 2.7 51.0 1.0
CG C:ASP16 2.9 63.3 1.0
CG A:ASN12 3.3 56.5 1.0
CG C:ASN12 3.4 60.9 1.0
CG B:ASN12 3.4 62.1 1.0
ND2 A:ASN12 3.7 54.4 1.0
ND2 C:ASN12 3.8 52.6 1.0
ND2 B:ASN12 3.9 60.7 1.0
CB B:ASP16 4.0 64.5 1.0
CB A:ASP16 4.2 56.2 1.0
O B:ASN12 4.3 67.1 1.0
O C:ASN12 4.4 66.1 1.0
O C:HOH206 4.4 72.1 1.0
CB C:ASP16 4.4 69.3 1.0
O A:ASN12 4.6 53.6 1.0
CB C:ASN12 4.7 59.6 1.0
CB B:ASN12 4.7 66.5 1.0
CB A:ASN12 4.7 56.4 1.0
O B:HOH206 4.8 74.5 1.0
C B:ASN12 4.9 69.4 1.0
C C:ASN12 5.0 70.6 1.0

Terbium binding site 2 out of 3 in 7p3h

Go back to Terbium Binding Sites List in 7p3h
Terbium binding site 2 out of 3 in the Peptide HC02 - Lanthanide Selectivity Engineered Into Structurally Characterized Designed Coiled Coils


Mono view


Stereo pair view

A full contact list of Terbium with other atoms in the Tb binding site number 2 of Peptide HC02 - Lanthanide Selectivity Engineered Into Structurally Characterized Designed Coiled Coils within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Tb101

b:66.5
occ:1.00
O B:HOH203 2.1 89.9 1.0
OE1 B:GLU3 2.4 89.2 1.0
OE2 B:GLU6 2.5 92.1 1.0
OE2 B:GLU3 2.6 94.5 1.0
OE1 B:GLU6 2.7 82.2 1.0
CD B:GLU3 2.8 92.2 1.0
CD B:GLU6 2.9 88.6 1.0
O B:HOH202 4.2 92.9 1.0
CG B:GLU3 4.3 95.3 1.0
CG B:GLU6 4.4 88.6 1.0
O B:HOH207 4.8 89.2 1.0
OE1 A:GLU1 4.9 142.8 1.0

Terbium binding site 3 out of 3 in 7p3h

Go back to Terbium Binding Sites List in 7p3h
Terbium binding site 3 out of 3 in the Peptide HC02 - Lanthanide Selectivity Engineered Into Structurally Characterized Designed Coiled Coils


Mono view


Stereo pair view

A full contact list of Terbium with other atoms in the Tb binding site number 3 of Peptide HC02 - Lanthanide Selectivity Engineered Into Structurally Characterized Designed Coiled Coils within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Tb101

b:78.3
occ:1.00
OE1 C:GLU3 2.6 88.8 1.0
OE1 C:GLU6 2.6 93.6 1.0
OE2 C:GLU3 2.7 89.5 1.0
CD C:GLU3 3.0 91.5 1.0
CD C:GLU6 3.6 92.1 1.0
OE2 C:GLU6 4.0 92.4 1.0
ZN B:ZN102 4.2 88.6 0.9
O C:HOH204 4.5 90.0 1.0
CG C:GLU3 4.5 95.5 1.0
CG C:GLU6 4.8 91.2 1.0
CB C:GLU6 4.8 88.3 1.0

Reference:

L.N.Slope, O.J.Daubney, H.Campbell, S.A.White, A.Peacock. Location Dependent Lanthanide Selectivity Engineered Into Structurally Characterized Designed Coiled Coils Angewandte Chemie 2021INTERNATIONAL Edition.
DOI: 10.1002/ANIE.202110500
Page generated: Fri Sep 24 16:39:17 2021

Last articles

Zn in 7OQY
Zn in 7PEL
Zn in 7OYG
Zn in 7P3S
Zn in 7PE7
Zn in 7RZC
Zn in 7PE9
Zn in 7PE8
Zn in 7RAG
Zn in 7RN5
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy