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Terbium in PDB 8ab2: Crystal Structure of the Lactate Dehydrogenase of Cyanobacterium Aponinum in Its Apo Form.

Enzymatic activity of Crystal Structure of the Lactate Dehydrogenase of Cyanobacterium Aponinum in Its Apo Form.

All present enzymatic activity of Crystal Structure of the Lactate Dehydrogenase of Cyanobacterium Aponinum in Its Apo Form.:
1.1.1.27;

Protein crystallography data

The structure of Crystal Structure of the Lactate Dehydrogenase of Cyanobacterium Aponinum in Its Apo Form., PDB code: 8ab2 was solved by A.Y.Robin, E.Girard, D.Madern, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 37.96 / 2.10
Space group I 41 2 2
Cell size a, b, c (Å), α, β, γ (°) 103.797, 103.797, 197.824, 90, 90, 90
R / Rfree (%) 18.3 / 22.3

Terbium Binding Sites:

The binding sites of Terbium atom in the Crystal Structure of the Lactate Dehydrogenase of Cyanobacterium Aponinum in Its Apo Form. (pdb code 8ab2). This binding sites where shown within 5.0 Angstroms radius around Terbium atom.
In total 4 binding sites of Terbium where determined in the Crystal Structure of the Lactate Dehydrogenase of Cyanobacterium Aponinum in Its Apo Form., PDB code: 8ab2:
Jump to Terbium binding site number: 1; 2; 3; 4;

Terbium binding site 1 out of 4 in 8ab2

Go back to Terbium Binding Sites List in 8ab2
Terbium binding site 1 out of 4 in the Crystal Structure of the Lactate Dehydrogenase of Cyanobacterium Aponinum in Its Apo Form.


Mono view


Stereo pair view

A full contact list of Terbium with other atoms in the Tb binding site number 1 of Crystal Structure of the Lactate Dehydrogenase of Cyanobacterium Aponinum in Its Apo Form. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Tb401

b:49.9
occ:0.88
TB A:7MT401 0.0 49.9 0.9
OE2 A:GLU61 2.3 49.9 1.0
N23 A:7MT401 2.4 58.0 0.9
N17 A:7MT401 2.4 61.4 0.9
N06 A:7MT401 2.4 57.2 0.9
OE1 A:GLU61 2.5 51.2 1.0
N02 A:7MT401 2.7 57.8 0.9
O26 A:7MT401 2.7 57.9 0.9
CD A:GLU61 2.8 58.7 1.0
N09 A:7MT401 2.8 57.3 0.9
O28 A:7MT401 2.9 61.4 0.9
C30 A:7MT401 3.2 59.0 0.9
C10 A:7MT401 3.2 60.7 0.9
C11 A:7MT401 3.2 57.9 0.9
C22 A:7MT401 3.3 58.4 0.9
C29 A:7MT401 3.3 57.1 0.9
C16 A:7MT401 3.4 62.1 0.9
C24 A:7MT401 3.4 58.8 0.9
C07 A:7MT401 3.4 57.2 0.9
C05 A:7MT401 3.5 57.1 0.9
C01 A:7MT401 3.5 57.7 0.9
C18 A:7MT401 3.6 63.2 0.9
C08 A:7MT401 3.6 57.0 0.9
C04 A:7MT401 3.7 57.4 0.9
C03 A:7MT401 3.7 57.4 0.9
CG A:GLU61 4.3 42.9 1.0
C19 A:7MT401 4.6 58.3 0.9
C13 A:7MT401 4.6 61.7 0.9
C21 A:7MT401 4.6 58.5 0.9
O A:HOH504 4.6 55.1 1.0
O25 A:7MT401 4.6 59.7 0.9
C15 A:7MT401 4.7 62.5 0.9
O27 A:7MT401 4.8 64.4 0.9

Terbium binding site 2 out of 4 in 8ab2

Go back to Terbium Binding Sites List in 8ab2
Terbium binding site 2 out of 4 in the Crystal Structure of the Lactate Dehydrogenase of Cyanobacterium Aponinum in Its Apo Form.


Mono view


Stereo pair view

A full contact list of Terbium with other atoms in the Tb binding site number 2 of Crystal Structure of the Lactate Dehydrogenase of Cyanobacterium Aponinum in Its Apo Form. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Tb402

b:82.6
occ:0.34
OE2 A:GLU314 2.5 65.5 1.0
OE1 A:GLU314 2.8 84.7 1.0
CD A:GLU314 3.0 69.8 1.0
CG A:GLU314 4.5 54.8 1.0
O A:HOH639 4.7 64.5 1.0
NE2 A:GLN318 4.9 87.6 1.0
CA A:TYR283 5.0 62.7 1.0

Terbium binding site 3 out of 4 in 8ab2

Go back to Terbium Binding Sites List in 8ab2
Terbium binding site 3 out of 4 in the Crystal Structure of the Lactate Dehydrogenase of Cyanobacterium Aponinum in Its Apo Form.


Mono view


Stereo pair view

A full contact list of Terbium with other atoms in the Tb binding site number 3 of Crystal Structure of the Lactate Dehydrogenase of Cyanobacterium Aponinum in Its Apo Form. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Tb403

b:76.6
occ:0.44
O A:HOH688 2.6 43.0 0.6
O A:HOH668 3.4 45.3 0.7
CG A:GLU132 4.5 49.0 1.0
CB A:GLU132 4.9 49.2 1.0

Terbium binding site 4 out of 4 in 8ab2

Go back to Terbium Binding Sites List in 8ab2
Terbium binding site 4 out of 4 in the Crystal Structure of the Lactate Dehydrogenase of Cyanobacterium Aponinum in Its Apo Form.


Mono view


Stereo pair view

A full contact list of Terbium with other atoms in the Tb binding site number 4 of Crystal Structure of the Lactate Dehydrogenase of Cyanobacterium Aponinum in Its Apo Form. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Tb404

b:88.2
occ:0.25
OD1 A:ASP181 2.9 58.6 1.0
OD2 A:ASP181 3.1 81.1 1.0
O A:HOH636 3.2 80.2 1.0
CG A:ASP181 3.4 50.8 1.0
O A:HOH505 4.2 57.4 1.0
CB A:ASP181 4.8 47.2 1.0

Reference:

A.Y.Robin, E.Girard, D.Madern. Crystal Structure of the Lactate Dehydrogenase of Cyanobacterium Aponinum in Its Apo Form. To Be Published.
Page generated: Fri Apr 7 20:12:44 2023

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