Terbium in PDB 8bhd: N-Terminal Domain of Plasmodium Berghei Glutamyl-Trna Synthetase (TBXO4 Derivative Crystal Structure)

All present enzymatic activity of N-Terminal Domain of Plasmodium Berghei Glutamyl-Trna Synthetase (TBXO4 Derivative Crystal Structure):
6.1.1.17;

The structure of N-Terminal Domain of Plasmodium Berghei Glutamyl-Trna Synthetase (TBXO4 Derivative Crystal Structure), PDB code: 8bhd was solved by P.Benas, J.R.Jaramillo Ponce, P.Legrand, M.Frugier, C.Sauter, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.85 / 3.17
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	130.11, 88.51, 168.64, 90, 105.7, 90
R / Rfree (%)	19.2 / 23.7

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 22;

Binding sites:

The binding sites of Terbium atom in the N-Terminal Domain of Plasmodium Berghei Glutamyl-Trna Synthetase (TBXO4 Derivative Crystal Structure) (pdb code 8bhd). This binding sites where shown within 5.0 Angstroms radius around Terbium atom.
In total 22 binding sites of Terbium where determined in the N-Terminal Domain of Plasmodium Berghei Glutamyl-Trna Synthetase (TBXO4 Derivative Crystal Structure), PDB code: 8bhd:
Jump to Terbium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Terbium binding site 1 out of 22 in the N-Terminal Domain of Plasmodium Berghei Glutamyl-Trna Synthetase (TBXO4 Derivative Crystal Structure)


Mono view


Stereo pair view

A full contact list of Terbium with other atoms in the Tb binding site number 1 of N-Terminal Domain of Plasmodium Berghei Glutamyl-Trna Synthetase (TBXO4 Derivative Crystal Structure) within 5.0Å range:

Terbium binding site 2 out of 22 in the N-Terminal Domain of Plasmodium Berghei Glutamyl-Trna Synthetase (TBXO4 Derivative Crystal Structure)


Mono view


Stereo pair view

A full contact list of Terbium with other atoms in the Tb binding site number 2 of N-Terminal Domain of Plasmodium Berghei Glutamyl-Trna Synthetase (TBXO4 Derivative Crystal Structure) within 5.0Å range: probe atom residue distance (Å) B Occ A:Tb306 b:259.5 occ:0.90 OG1 A:THR119 5.0 159.2 1.0

Terbium binding site 3 out of 22 in the N-Terminal Domain of Plasmodium Berghei Glutamyl-Trna Synthetase (TBXO4 Derivative Crystal Structure)


Mono view


Stereo pair view

A full contact list of Terbium with other atoms in the Tb binding site number 3 of N-Terminal Domain of Plasmodium Berghei Glutamyl-Trna Synthetase (TBXO4 Derivative Crystal Structure) within 5.0Å range: probe atom residue distance (Å) B Occ A:Tb307 b:324.8 occ:0.94 OD2 A:ASP210 2.4 183.9 1.0 CG A:ASP210 3.2 177.2 1.0 OD1 A:ASP210 3.3 199.5 1.0 CB A:ASP210 4.6 151.4 1.0

Terbium binding site 4 out of 22 in the N-Terminal Domain of Plasmodium Berghei Glutamyl-Trna Synthetase (TBXO4 Derivative Crystal Structure)


Mono view


Stereo pair view

A full contact list of Terbium with other atoms in the Tb binding site number 4 of N-Terminal Domain of Plasmodium Berghei Glutamyl-Trna Synthetase (TBXO4 Derivative Crystal Structure) within 5.0Å range:

Terbium binding site 5 out of 22 in the N-Terminal Domain of Plasmodium Berghei Glutamyl-Trna Synthetase (TBXO4 Derivative Crystal Structure)


Mono view


Stereo pair view

A full contact list of Terbium with other atoms in the Tb binding site number 5 of N-Terminal Domain of Plasmodium Berghei Glutamyl-Trna Synthetase (TBXO4 Derivative Crystal Structure) within 5.0Å range:

Terbium binding site 6 out of 22 in the N-Terminal Domain of Plasmodium Berghei Glutamyl-Trna Synthetase (TBXO4 Derivative Crystal Structure)


Mono view


Stereo pair view

A full contact list of Terbium with other atoms in the Tb binding site number 6 of N-Terminal Domain of Plasmodium Berghei Glutamyl-Trna Synthetase (TBXO4 Derivative Crystal Structure) within 5.0Å range: probe atom residue distance (Å) B Occ A:Tb310 b:252.3 occ:0.64 ND2 A:ASN102 4.5 177.3 1.0

Terbium binding site 7 out of 22 in the N-Terminal Domain of Plasmodium Berghei Glutamyl-Trna Synthetase (TBXO4 Derivative Crystal Structure)


Mono view


Stereo pair view

A full contact list of Terbium with other atoms in the Tb binding site number 7 of N-Terminal Domain of Plasmodium Berghei Glutamyl-Trna Synthetase (TBXO4 Derivative Crystal Structure) within 5.0Å range: probe atom residue distance (Å) B Occ A:Tb311 b:224.2 occ:0.56 OG1 A:THR214 3.8 198.8 1.0 OD1 A:ASN29 5.0 167.8 1.0

Terbium binding site 8 out of 22 in the N-Terminal Domain of Plasmodium Berghei Glutamyl-Trna Synthetase (TBXO4 Derivative Crystal Structure)


Mono view


Stereo pair view

A full contact list of Terbium with other atoms in the Tb binding site number 8 of N-Terminal Domain of Plasmodium Berghei Glutamyl-Trna Synthetase (TBXO4 Derivative Crystal Structure) within 5.0Å range: probe atom residue distance (Å) B Occ B:Tb304 b:231.0 occ:1.00 OE1 B:GLU129 2.7 186.3 1.0 OE2 B:GLU129 3.0 178.2 1.0 CD B:GLU129 3.1 172.7 1.0 CG B:GLU129 4.4 153.0 1.0 O C:SER83 4.8 163.5 1.0 CB B:GLU129 4.8 142.7 1.0

Terbium binding site 9 out of 22 in the N-Terminal Domain of Plasmodium Berghei Glutamyl-Trna Synthetase (TBXO4 Derivative Crystal Structure)


Mono view


Stereo pair view

A full contact list of Terbium with other atoms in the Tb binding site number 9 of N-Terminal Domain of Plasmodium Berghei Glutamyl-Trna Synthetase (TBXO4 Derivative Crystal Structure) within 5.0Å range: probe atom residue distance (Å) B Occ B:Tb305 b:217.3 occ:0.65 OD2 B:ASP210 2.5 223.8 1.0 CG B:ASP210 3.3 200.6 1.0 OD1 B:ASP210 3.4 195.1 1.0 CB B:ASP210 4.7 178.6 1.0

Terbium binding site 10 out of 22 in the N-Terminal Domain of Plasmodium Berghei Glutamyl-Trna Synthetase (TBXO4 Derivative Crystal Structure)


Mono view


Stereo pair view

A full contact list of Terbium with other atoms in the Tb binding site number 10 of N-Terminal Domain of Plasmodium Berghei Glutamyl-Trna Synthetase (TBXO4 Derivative Crystal Structure) within 5.0Å range: probe atom residue distance (Å) B Occ B:Tb306 b:227.9 occ:0.44 OE1 B:GLU148 2.5 204.6 1.0 OE2 B:GLU148 3.1 185.7 1.0 CD B:GLU148 3.2 179.8 1.0 CG B:GLU148 4.6 141.2 1.0

J.R.Jaramillo Ponce, A.Theobald-Dietrich, P.Benas, C.Paulus, C.Sauter, M.Frugier. Solution X-Ray Scattering Highlights Discrepancies in Plasmodium Multi-Aminoacyl-Trna Synthetase Complexes. Protein Sci. E4564 2023.
ISSN: ESSN 1469-896X
PubMed: 36606712
DOI: 10.1002/PRO.4564