Atomistry » Terbium » PDB 1m9s-6xym » 1m9s
Atomistry »
  Terbium »
    PDB 1m9s-6xym »
      1m9s »

Terbium in PDB 1m9s: Crystal Structure of Internalin B (Inlb), A Listeria Monocytogenes Virulence Protein Containing SH3-Like Domains.

Protein crystallography data

The structure of Crystal Structure of Internalin B (Inlb), A Listeria Monocytogenes Virulence Protein Containing SH3-Like Domains., PDB code: 1m9s was solved by M.Marino, M.Banerjee, R.Jonquieres, P.Cossart, P.Ghosh, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 2.65
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 48.500, 330.900, 182.400, 90.00, 90.00, 90.00
R / Rfree (%) 27.3 / 30.2

Terbium Binding Sites:

The binding sites of Terbium atom in the Crystal Structure of Internalin B (Inlb), A Listeria Monocytogenes Virulence Protein Containing SH3-Like Domains. (pdb code 1m9s). This binding sites where shown within 5.0 Angstroms radius around Terbium atom.
In total 7 binding sites of Terbium where determined in the Crystal Structure of Internalin B (Inlb), A Listeria Monocytogenes Virulence Protein Containing SH3-Like Domains., PDB code: 1m9s:
Jump to Terbium binding site number: 1; 2; 3; 4; 5; 6; 7;

Terbium binding site 1 out of 7 in 1m9s

Go back to Terbium Binding Sites List in 1m9s
Terbium binding site 1 out of 7 in the Crystal Structure of Internalin B (Inlb), A Listeria Monocytogenes Virulence Protein Containing SH3-Like Domains.


Mono view


Stereo pair view

A full contact list of Terbium with other atoms in the Tb binding site number 1 of Crystal Structure of Internalin B (Inlb), A Listeria Monocytogenes Virulence Protein Containing SH3-Like Domains. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Tb639

b:0.1
occ:1.00
O A:HOH688 2.8 70.9 1.0
OD1 A:ASN173 2.9 66.7 1.0
OE1 A:GLU194 3.3 91.0 1.0
O A:HOH661 3.5 59.5 1.0
OE2 A:GLU194 3.6 91.5 1.0
OE2 A:GLU150 3.6 65.7 1.0
O A:HOH660 3.7 56.6 1.0
TB A:TB640 3.7 0.2 1.0
CD A:GLU194 3.8 81.3 1.0
TB A:TB641 3.9 0.9 1.0
CG A:ASN173 4.0 61.8 1.0
CD A:GLU150 4.1 79.5 1.0
O A:HOH657 4.1 62.8 1.0
OE1 A:GLU150 4.2 87.3 1.0
ND2 A:ASN173 4.6 69.3 1.0

Terbium binding site 2 out of 7 in 1m9s

Go back to Terbium Binding Sites List in 1m9s
Terbium binding site 2 out of 7 in the Crystal Structure of Internalin B (Inlb), A Listeria Monocytogenes Virulence Protein Containing SH3-Like Domains.


Mono view


Stereo pair view

A full contact list of Terbium with other atoms in the Tb binding site number 2 of Crystal Structure of Internalin B (Inlb), A Listeria Monocytogenes Virulence Protein Containing SH3-Like Domains. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Tb640

b:0.2
occ:1.00
TB A:TB639 3.7 0.1 1.0
OE1 A:GLU194 3.7 91.0 1.0
O A:HOH658 3.9 75.3 1.0
O A:HOH661 3.9 59.5 1.0
CD A:GLU194 3.9 81.3 1.0
O A:HOH660 4.2 56.6 1.0
O A:HOH659 4.2 71.0 1.0
OE2 A:GLU194 4.4 91.5 1.0
CG A:GLU194 4.4 79.1 1.0
OE1 A:GLU236 4.8 76.0 1.0

Terbium binding site 3 out of 7 in 1m9s

Go back to Terbium Binding Sites List in 1m9s
Terbium binding site 3 out of 7 in the Crystal Structure of Internalin B (Inlb), A Listeria Monocytogenes Virulence Protein Containing SH3-Like Domains.


Mono view


Stereo pair view

A full contact list of Terbium with other atoms in the Tb binding site number 3 of Crystal Structure of Internalin B (Inlb), A Listeria Monocytogenes Virulence Protein Containing SH3-Like Domains. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Tb641

b:0.9
occ:1.00
O A:HOH688 3.5 70.9 1.0
OE1 A:GLU150 3.5 87.3 1.0
TB A:TB639 3.9 0.1 1.0
CD A:GLU150 4.5 79.5 1.0
OE2 A:GLU150 5.0 65.7 1.0

Terbium binding site 4 out of 7 in 1m9s

Go back to Terbium Binding Sites List in 1m9s
Terbium binding site 4 out of 7 in the Crystal Structure of Internalin B (Inlb), A Listeria Monocytogenes Virulence Protein Containing SH3-Like Domains.


Mono view


Stereo pair view

A full contact list of Terbium with other atoms in the Tb binding site number 4 of Crystal Structure of Internalin B (Inlb), A Listeria Monocytogenes Virulence Protein Containing SH3-Like Domains. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Tb642

b:0.2
occ:1.00
OD1 A:ASP275 2.9 84.4 1.0
CG A:ASP275 3.6 86.8 1.0
OD2 A:ASP275 3.7 88.2 1.0
OD2 A:ASP277 3.9 96.5 1.0
O A:ASP275 4.3 72.8 1.0
OD1 A:ASP277 4.4 0.0 1.0
CG A:ASP277 4.6 98.3 1.0
CB A:ASP275 4.8 75.2 1.0
C A:ASP275 4.9 72.1 1.0
CA A:ASP275 4.9 72.6 1.0

Terbium binding site 5 out of 7 in 1m9s

Go back to Terbium Binding Sites List in 1m9s
Terbium binding site 5 out of 7 in the Crystal Structure of Internalin B (Inlb), A Listeria Monocytogenes Virulence Protein Containing SH3-Like Domains.


Mono view


Stereo pair view

A full contact list of Terbium with other atoms in the Tb binding site number 5 of Crystal Structure of Internalin B (Inlb), A Listeria Monocytogenes Virulence Protein Containing SH3-Like Domains. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Tb643

b:0.2
occ:0.50
O A:GLU293 3.7 70.5 1.0
CG A:GLU293 4.2 84.5 1.0
C A:GLU293 4.5 69.8 1.0
N A:GLU293 4.7 81.9 1.0
OD2 A:ASP274 4.9 72.5 1.0

Terbium binding site 6 out of 7 in 1m9s

Go back to Terbium Binding Sites List in 1m9s
Terbium binding site 6 out of 7 in the Crystal Structure of Internalin B (Inlb), A Listeria Monocytogenes Virulence Protein Containing SH3-Like Domains.


Mono view


Stereo pair view

A full contact list of Terbium with other atoms in the Tb binding site number 6 of Crystal Structure of Internalin B (Inlb), A Listeria Monocytogenes Virulence Protein Containing SH3-Like Domains. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Tb644

b:0.6
occ:1.00
O A:PRO49 2.8 0.3 1.0
OD1 A:ASP51 2.9 0.8 1.0
C A:PRO49 3.8 0.5 1.0
CG A:ASP51 4.0 0.2 1.0
CA A:PRO49 4.2 0.4 1.0
CE A:LYS45 4.6 0.3 1.0
OD2 A:ASP51 4.6 0.0 1.0
N A:ASP51 4.7 0.2 1.0
O A:PHE48 4.7 0.7 1.0
O A:LYS45 4.7 0.6 1.0
NZ A:LYS45 4.8 0.7 1.0
CA A:ASP51 5.0 0.6 1.0

Terbium binding site 7 out of 7 in 1m9s

Go back to Terbium Binding Sites List in 1m9s
Terbium binding site 7 out of 7 in the Crystal Structure of Internalin B (Inlb), A Listeria Monocytogenes Virulence Protein Containing SH3-Like Domains.


Mono view


Stereo pair view

A full contact list of Terbium with other atoms in the Tb binding site number 7 of Crystal Structure of Internalin B (Inlb), A Listeria Monocytogenes Virulence Protein Containing SH3-Like Domains. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Tb645

b:0.2
occ:1.00
O A:ASN231 3.3 62.6 1.0
OD1 A:ASP233 3.3 64.4 1.0
OD2 A:ASP233 3.6 79.6 1.0
CG A:ASP233 3.7 71.1 1.0
C A:ASN231 4.0 56.2 1.0
CA A:ASN231 4.2 53.3 1.0
CD A:LYS306 4.2 94.2 1.0
CE A:LYS306 4.4 97.2 1.0
NZ A:LYS306 4.4 0.6 1.0
ND2 A:ASN231 4.5 44.2 1.0
CB A:ASN231 4.6 51.4 1.0
O A:LEU232 4.7 55.4 1.0
OE1 A:GLN211 4.8 74.1 1.0
CG A:LYS306 4.9 86.5 1.0
C A:LEU232 4.9 57.4 1.0
N A:LEU232 5.0 54.1 1.0

Reference:

M.Marino, M.Banerjee, R.Jonquieres, P.Cossart, P.Ghosh. Gw Domains of the Listeria Monocytogenes Invasion Protein Inlb Are SH3-Like and Mediate Binding to Host Ligands Embo J. V. 21 5623 2002.
ISSN: ISSN 0261-4189
PubMed: 12411480
DOI: 10.1093/EMBOJ/CDF558
Page generated: Fri Oct 11 08:10:39 2024

Last articles

Fe in 2YXO
Fe in 2YRS
Fe in 2YXC
Fe in 2YNM
Fe in 2YVJ
Fe in 2YP1
Fe in 2YU2
Fe in 2YU1
Fe in 2YQB
Fe in 2YOO
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy